Architecture specific change in rpms/pcp.git
by githook-noreply＠fedoraproject.org
The package rpms/pcp.git has added or updated architecture specific content in its
spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s):
https://src.fedoraproject.org/cgit/rpms/pcp.git/commit/?id=7dd6b3631a5f38....
Change:
+%ifarch x86_64
Thanks.
Full change:
============
commit 7dd6b3631a5f3844eb8d703762f91f10a42e3907
Author: Mark Goodwin <mgoodwin(a)redhat.com>
Date: Thu Feb 27 21:54:04 2020 +1100
Update to pcp-5.0.3 community sources
diff --git a/pcp.spec b/pcp.spec
index 4e302f8..b9cc100 100644
--- a/pcp.spec
+++ b/pcp.spec
@@ -1,6 +1,6 @@
Name: pcp
-Version: 5.0.2
-Release: 2%{?dist}
+Version: 5.0.3
+Release: 1%{?dist}
Summary: System-level performance monitoring and performance management
License: GPLv2+ and LGPLv2+ and CC-BY
URL: https://pcp.io
@@ -14,6 +14,12 @@ Source0: %{bintray}/pcp/source/pcp-%{version}.src.tar.gz
%global __python2 python
%endif
+%if 0%{?rhel} >= 7 || 0%{?fedora} >= 17
+%global _hostname_executable /usr/bin/hostname
+%else
+%global _hostname_executable /bin/hostname
+%endif
+
%if 0%{?fedora} || 0%{?rhel} > 5
%global disable_selinux 0
%else
@@ -75,23 +81,23 @@ Source0: %{bintray}/pcp/source/pcp-%{version}.src.tar.gz
%global perl_interpreter perl
%endif
-# support for pmdabcc
+# support for pmdabcc, check bcc.spec for supported architectures of bcc
%if 0%{?fedora} >= 25 || 0%{?rhel} > 6
-%ifarch s390 s390x armv7hl aarch64 i686
-%global disable_bcc 1
-%else
+%ifarch x86_64 %{power64} aarch64 s390x
%global disable_bcc 0
+%else
+%global disable_bcc 1
%endif
%else
%global disable_bcc 1
%endif
-# support for pmdabpftrace
-%if 0%{?fedora} >= 30 || 0%{?rhel} > 8
-%ifarch s390 s390x armv7hl aarch64 i686
-%global disable_bpftrace 1
-%else
+# support for pmdabpftrace, check bpftrace.spec for supported architectures of bpftrace
+%if 0%{?fedora} >= 30 || 0%{?rhel} > 7
+%ifarch x86_64 %{power64} aarch64 s390x
%global disable_bpftrace 0
+%else
+%global disable_bpftrace 1
%endif
%else
%global disable_bpftrace 1
@@ -108,6 +114,17 @@ Source0: %{bintray}/pcp/source/pcp-%{version}.src.tar.gz
%global disable_json 1
%endif
+# No mssql ODBC driver on non-x86 platforms
+%ifarch x86_64
+%if !%{disable_python2} || !%{disable_python3}
+%global disable_mssql 0
+%else
+%global disable_mssql 1
+%endif
+%else
+%global disable_mssql 1
+%endif
+
# support for pmdanutcracker (perl deps missing on rhel)
%if 0%{?rhel} == 0
%global disable_nutcracker 0
@@ -229,7 +246,7 @@ BuildRequires: perl-generators
BuildRequires: perl-devel perl(strict)
BuildRequires: perl(ExtUtils::MakeMaker) perl(LWP::UserAgent) perl(JSON)
BuildRequires: perl(LWP::UserAgent) perl(Time::HiRes) perl(Digest::MD5)
-BuildRequires: man hostname
+BuildRequires: man %{_hostname_executable}
%if !%{disable_systemd}
BuildRequires: systemd-devel
%endif
@@ -243,7 +260,7 @@ BuildRequires: qt5-qtsvg-devel
%endif
%endif
-Requires: bash xz gawk sed grep findutils which hostname
+Requires: bash xz gawk sed grep findutils which %{_hostname_executable}
Requires: pcp-libs = %{version}-%{release}
%if !%{disable_selinux}
Requires: pcp-selinux = %{version}-%{release}
@@ -482,7 +499,10 @@ Requires: pcp-pmda-bpftrace
%if !%{disable_python2} || !%{disable_python3}
Requires: pcp-pmda-gluster pcp-pmda-zswap pcp-pmda-unbound pcp-pmda-mic
Requires: pcp-pmda-libvirt pcp-pmda-lio pcp-pmda-openmetrics pcp-pmda-haproxy
-Requires: pcp-pmda-lmsensors pcp-pmda-mssql pcp-pmda-netcheck
+Requires: pcp-pmda-lmsensors pcp-pmda-netcheck
+%endif
+%if !%{disable_mssql}
+Requires: pcp-pmda-mssql
%endif
%if !%{disable_snmp}
Requires: pcp-pmda-snmp
@@ -929,6 +949,8 @@ Requires: perl-PCP-PMDA = %{version}-%{release}
Requires: perl(LWP::UserAgent)
Requires: perl(XML::LibXML)
Requires: perl(File::Slurp)
+Requires: perl-autodie
+Requires: perl-Time-HighRes
%description pmda-bind2
This package contains the PCP Performance Metrics Domain Agent (PMDA) for
@@ -943,6 +965,8 @@ License: GPLv2+
Summary: Performance Co-Pilot (PCP) metrics for Redis
URL: https://pcp.io
Requires: perl-PCP-PMDA = %{version}-%{release}
+Requires: perl-autodie
+Requires: perl-Time-HiRes
%description pmda-redis
This package contains the PCP Performance Metrics Domain Agent (PMDA) for
@@ -989,6 +1013,7 @@ License: GPLv2+
Summary: Performance Co-Pilot (PCP) metrics for Database response times and Availablility
URL: https://pcp.io
Requires: perl-PCP-PMDA = %{version}-%{release}
+Requires: perl-DBI
%description pmda-dbping
This package contains the PCP Performance Metrics Domain Agent (PMDA) for
@@ -1021,6 +1046,7 @@ Summary: Performance Co-Pilot (PCP) metrics for 389 Directory Server Loggers
URL: https://pcp.io
Requires: perl-PCP-PMDA = %{version}-%{release}
Requires: perl-Date-Manip
+Requires: 389-ds-base
%description pmda-ds389log
This package contains the PCP Performance Metrics Domain Agent (PMDA) for
@@ -1050,6 +1076,8 @@ License: GPLv2+
Summary: Performance Co-Pilot (PCP) metrics for a GPS Daemon
URL: https://pcp.io
Requires: perl-PCP-PMDA = %{version}-%{release}
+Requires: perl-Time-HiRes
+Requires: perl-JSON
%description pmda-gpsd
This package contains the PCP Performance Metrics Domain Agent (PMDA) for
@@ -1210,6 +1238,7 @@ License: GPLv2+
Summary: Performance Co-Pilot (PCP) metrics for PowerDNS
URL: https://pcp.io
Requires: perl-PCP-PMDA = %{version}-%{release}
+Requires: perl-Time-HiRes
%description pmda-pdns
This package contains the PCP Performance Metrics Domain Agent (PMDA) for
@@ -1608,6 +1637,7 @@ License: GPLv2+
Summary: Performance Co-Pilot (PCP) metrics for hardware sensors
URL: https://pcp.io
Requires: pcp-libs = %{version}-%{release}
+Requires: lm_sensors
%if !%{disable_python3}
Requires: python3-pcp
%else
@@ -1621,11 +1651,11 @@ collecting metrics about the Linux hardware monitoring sensors.
# end pcp-pmda-lmsensors
#
-# pcp-pmda-mssql
+# pcp-pmda-netcheck
#
-%package pmda-mssql
+%package pmda-netcheck
License: GPLv2+
-Summary: Performance Co-Pilot (PCP) metrics for Microsoft SQL Server
+Summary: Performance Co-Pilot (PCP) metrics for simple network checks
URL: https://pcp.io
Requires: pcp-libs = %{version}-%{release}
%if !%{disable_python3}
@@ -1633,17 +1663,20 @@ Requires: python3-pcp
%else
Requires: %{__python2}-pcp
%endif
-%description pmda-mssql
+%description pmda-netcheck
This package contains the PCP Performance Metrics Domain Agent (PMDA) for
-collecting metrics from Microsoft SQL Server.
-# end pcp-pmda-mssql
+collecting metrics from simple network checks.
+# end pcp-pmda-netcheck
+
+%endif
+%if !%{disable_mssql}
#
-# pcp-pmda-netcheck
+# pcp-pmda-mssql
#
-%package pmda-netcheck
+%package pmda-mssql
License: GPLv2+
-Summary: Performance Co-Pilot (PCP) metrics for simple network checks
+Summary: Performance Co-Pilot (PCP) metrics for Microsoft SQL Server
URL: https://pcp.io
Requires: pcp-libs = %{version}-%{release}
%if !%{disable_python3}
@@ -1651,11 +1684,10 @@ Requires: python3-pcp
%else
Requires: %{__python2}-pcp
%endif
-%description pmda-netcheck
+%description pmda-mssql
This package contains the PCP Performance Metrics Domain Agent (PMDA) for
-collecting metrics from simple network checks.
-# end pcp-pmda-netcheck
-
+collecting metrics from Microsoft SQL Server.
+# end pcp-pmda-mssql
%endif
%if !%{disable_json}
@@ -1867,6 +1899,7 @@ License: GPLv2+
Summary: Performance Co-Pilot (PCP) metrics for S.M.A.R.T values
URL: https://pcp.io
Requires: pcp-libs = %{version}-%{release}
+Requires: smartmontools
%description pmda-smart
This package contains the PCP Performance Metric Domain Agent (PMDA) for
collecting metrics of disk S.M.A.R.T values making use of data from the
@@ -2111,6 +2144,11 @@ rm -f $RPM_BUILD_ROOT/%{_pmdasdir}/ib
rm -fr $RPM_BUILD_ROOT/%{_pmdasdir}/infiniband
%endif
+%if %{disable_mssql}
+# remove pmdamssql on platforms lacking MSODBC driver packages.
+rm -fr $RPM_BUILD_ROOT/%{_pmdasdir}/mssql
+%endif
+
%if %{disable_selinux}
rm -fr $RPM_BUILD_ROOT/%{_selinuxdir}
%endif
@@ -2129,6 +2167,10 @@ rm -rf $RPM_BUILD_ROOT/usr/share/doc/pcp-gui
desktop-file-validate $RPM_BUILD_ROOT/%{_datadir}/applications/pmchart.desktop
%endif
+%if %{disable_xlsx}
+rm -f $RPM_BUILD_ROOT/%{_bashcompdir}/pcp2xlsx
+%endif
+
%if 0%{?rhel} || 0%{?fedora}
# Fedora and RHEL default local only access for pmcd and pmlogger
sed -i -e '/^# .*_LOCAL=1/s/^# //' $RPM_BUILD_ROOT/%{_sysconfdir}/sysconfig/{pmcd,pmlogger}
@@ -2214,7 +2256,7 @@ ls -1 $RPM_BUILD_ROOT/%{_pmdasdir} |\
# all base pcp package files except those split out into sub-packages
ls -1 $RPM_BUILD_ROOT/%{_bindir} |\
- grep -E -v 'pmiostat|zabbix|zbxpcp|dstat|pmrep' |\
+ grep -E -v 'pmiostat|zabbix|zbxpcp|dstat|pmrep|pcp2csv' |\
grep -E -v 'pcp2spark|pcp2graphite|pcp2influxdb|pcp2zabbix' |\
grep -E -v 'pcp2elasticsearch|pcp2json|pcp2xlsx|pcp2xml' |\
grep -E -v 'pmdbg|pmclient|pmerr|genpmda' |\
@@ -2222,7 +2264,7 @@ sed -e 's#^#'%{_bindir}'\/#' >base_bin.list
ls -1 $RPM_BUILD_ROOT/%{_bashcompdir} |\
grep -E -v 'pcp2spark|pcp2graphite|pcp2influxdb|pcp2zabbix' |\
grep -E -v 'pcp2elasticsearch|pcp2json|pcp2xlsx|pcp2xml' |\
- grep -E -v 'pmrep|pmdumptext' |\
+ grep -E -v 'pcp2csv|pmrep|pmdumptext' |\
sed -e 's#^#'%{_bashcompdir}'\/#' >base_bashcomp.list
# Separate the pcp-system-tools package files.
@@ -2230,10 +2272,10 @@ sed -e 's#^#'%{_bashcompdir}'\/#' >base_bashcomp.list
# so its also in pcp-system-tools.
%if !%{disable_python2} || !%{disable_python3}
ls -1 $RPM_BUILD_ROOT/%{_bindir} |\
- egrep -e 'pmiostat|pmrep|dstat' |\
+ egrep -e 'pmiostat|pmrep|dstat|pcp2csv' |\
sed -e 's#^#'%{_bindir}'\/#' >pcp-system-tools.list
ls -1 $RPM_BUILD_ROOT/%{_libexecdir}/pcp/bin |\
- egrep -e 'atop|collectl|dmcache|dstat|free|iostat|ipcs|lvmcache|mpstat' \
+ egrep -e 'atop|dmcache|dstat|free|iostat|ipcs|lvmcache|mpstat' \
-e 'numastat|pidstat|shping|tapestat|uptime|verify' |\
sed -e 's#^#'%{_libexecdir}/pcp/bin'\/#' >>pcp-system-tools.list
%endif
@@ -2248,7 +2290,7 @@ ls -1 $RPM_BUILD_ROOT/%{_libexecdir}/pcp/bin |\
ls -1 $RPM_BUILD_ROOT/%{_libexecdir}/pcp/bin |\
%if !%{disable_python2} || !%{disable_python3}
- grep -E -v 'atop|collectl|dmcache|dstat|free|iostat|ipcs|lvmcache|mpstat' |\
+ grep -E -v 'atop|dmcache|dstat|free|iostat|ipcs|lvmcache|mpstat' |\
grep -E -v 'numastat|shping|tapestat|uptime|verify|selinux-setup' |\
%endif
grep -E -v 'pmlogger_daily_report' |\
@@ -2503,8 +2545,10 @@ fi
%preun pmda-lmsensors
%{pmda_remove "$1" "lmsensors"}
+%if !%{disable_mssql}
%preun pmda-mssql
%{pmda_remove "$1" "mssql"}
+%endif
%preun pmda-netcheck
%{pmda_remove "$1" "netcheck"}
@@ -3097,9 +3141,6 @@ cd
%files pmda-lmsensors
%{_pmdasdir}/lmsensors
-%files pmda-mssql
-%{_pmdasdir}/mssql
-
%files pmda-netcheck
%{_pmdasdir}/netcheck
@@ -3109,6 +3150,11 @@ cd
%{_libdir}/zabbix
%{_sysconfdir}/zabbix/zabbix_agentd.d/zbxpcp.conf
+%if !%{disable_mssql}
+%files pmda-mssql
+%{_pmdasdir}/mssql
+%endif
+
%if !%{disable_json}
%files pmda-json
%{_pmdasdir}/json
@@ -3217,6 +3263,13 @@ cd
%endif
%changelog
+* Thu Feb 27 2020 Mark Goodwin <mgoodwin(a)redhat.com> - 5.0.3-1
+- Avoid python ctypes bitfield struct on-stack (BZ 1800685)
+- Add dstat support for DM/MD/part devices (BZ 1794273)
+- Fix compilation with gcc version 10 (BZ 1793495)
+- Fix dstat sub-sample averaging (BZ 1780039)
+- Update to latest PCP sources.
+
* Wed Jan 29 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 5.0.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
diff --git a/sources b/sources
index 2e2fdc4..6b028b3 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-SHA512 (pcp-5.0.2.src.tar.gz) = 3c4917995413841d813dd17168a7cafc007971e665e5d5a24192e2c03fe31af8bb948d928ceb054d369c0c1ae597bac2b1d7df25b9295a312c85777a2f31c4ec
+SHA512 (pcp-5.0.3.src.tar.gz) = 7b7b8d0df933ae555b2b99ba88e1dfceac06d123a2fbdc700f75b22da307073b090ce56bbff64069e1fe002ee14961aef619a84af57c354ff48ad902e2fc87d1
4 years, 1 month
- 1
- 0
Architecture specific change in rpms/ghc-prettyprinter-ansi-terminal.git
by githook-noreply＠fedoraproject.org
The package rpms/ghc-prettyprinter-ansi-terminal.git has added or updated architecture specific content in its
spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s):
https://src.fedoraproject.org/cgit/rpms/ghc-prettyprinter-ansi-terminal.g....
Change:
+%ifnarch s390x
Thanks.
Full change:
============
commit a45fd39b4080f5604e44015f0e40e68627875a32
Author: Jens Petersen <petersen(a)redhat.com>
Date: Thu Feb 27 18:20:20 2020 +0800
remove from summary
diff --git a/ghc-prettyprinter-ansi-terminal.spec b/ghc-prettyprinter-ansi-terminal.spec
index 976a787..d659b72 100644
--- a/ghc-prettyprinter-ansi-terminal.spec
+++ b/ghc-prettyprinter-ansi-terminal.spec
@@ -12,7 +12,7 @@
Name: ghc-%{pkg_name}
Version: 1.1.1.2
Release: 2%{?dist}
-Summary: ANSI terminal backend for the prettyprinter package
+Summary: ANSI terminal backend for the prettyprinter package
License: BSD
Url: https://hackage.haskell.org/package/%{pkg_name}
commit a56b4ed3b1cac516310049845e087dcf7beea638
Author: Jens Petersen <petersen(a)redhat.com>
Date: Thu Feb 27 18:19:30 2020 +0800
import #1803320
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..0166850
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1 @@
+/prettyprinter-ansi-terminal-1.1.1.2.tar.gz
diff --git a/ghc-prettyprinter-ansi-terminal.spec b/ghc-prettyprinter-ansi-terminal.spec
new file mode 100644
index 0000000..976a787
--- /dev/null
+++ b/ghc-prettyprinter-ansi-terminal.spec
@@ -0,0 +1,139 @@
+# generated by cabal-rpm-2.0.2
+# https://fedoraproject.org/wiki/Packaging:Haskell
+
+%global pkg_name prettyprinter-ansi-terminal
+%global pkgver %{pkg_name}-%{version}
+
+# doctest: unknown RTS option: -N
+%ifnarch s390x
+%bcond_without tests
+%endif
+
+Name: ghc-%{pkg_name}
+Version: 1.1.1.2
+Release: 2%{?dist}
+Summary: ANSI terminal backend for the prettyprinter package
+
+License: BSD
+Url: https://hackage.haskell.org/package/%{pkg_name}
+# Begin cabal-rpm sources:
+Source0: https://hackage.haskell.org/package/%{pkgver}/%{pkgver}.tar.gz
+# End cabal-rpm sources
+
+# Begin cabal-rpm deps:
+BuildRequires: ghc-Cabal-devel
+BuildRequires: ghc-rpm-macros
+BuildRequires: ghc-ansi-terminal-prof
+BuildRequires: ghc-base-prof
+BuildRequires: ghc-prettyprinter-prof
+BuildRequires: ghc-text-prof
+%if %{with tests}
+BuildRequires: ghc-doctest-devel
+%endif
+# End cabal-rpm deps
+
+%description
+This package defines a renderer for documents generated by the `prettyprinter`
+package, suitable for displaying them on ANSI-compatible terminals, including
+colors, boldening, underlining and italication.
+
+For more information about the prettyprinter in general, refer to the main
+`prettyprinter` package documentation.
+
+
+%package devel
+Summary: Haskell %{pkg_name} library development files
+Provides: %{name}-static = %{version}-%{release}
+Provides: %{name}-static%{?_isa} = %{version}-%{release}
+%if %{defined ghc_version}
+Requires: ghc-compiler = %{ghc_version}
+%endif
+Requires: %{name}%{?_isa} = %{version}-%{release}
+
+%description devel
+This package provides the Haskell %{pkg_name} library
+development files.
+
+
+%if %{with haddock}
+%package doc
+Summary: Haskell %{pkg_name} library documentation
+BuildArch: noarch
+
+%description doc
+This package provides the Haskell %{pkg_name} library
+documentation.
+%endif
+
+
+%if %{with ghc_prof}
+%package prof
+Summary: Haskell %{pkg_name} profiling library
+Requires: %{name}-devel%{?_isa} = %{version}-%{release}
+Supplements: (%{name}-devel and ghc-prof)
+
+%description prof
+This package provides the Haskell %{pkg_name} profiling
+library.
+%endif
+
+
+%prep
+# Begin cabal-rpm setup:
+%setup -q -n %{pkgver}
+# End cabal-rpm setup
+
+
+%build
+# Begin cabal-rpm build:
+%ghc_lib_build
+# End cabal-rpm build
+
+
+%install
+# Begin cabal-rpm install
+%ghc_lib_install
+# End cabal-rpm install
+
+
+%check
+%cabal_test
+
+
+%if 0%{?fedora} < 31 || 0%{?rhel} < 8
+%post devel
+%ghc_pkg_recache
+
+
+%postun devel
+%ghc_pkg_recache
+%endif
+
+
+%files -f %{name}.files
+# Begin cabal-rpm files:
+%license LICENSE.md
+# End cabal-rpm files
+
+
+%files devel -f %{name}-devel.files
+%doc CHANGELOG.md README.md
+
+
+%if %{with haddock}
+%files doc -f %{name}-doc.files
+%license LICENSE.md
+%endif
+
+
+%if %{with ghc_prof}
+%files prof -f %{name}-prof.files
+%endif
+
+
+%changelog
+* Sat Feb 15 2020 Jens Petersen <petersen(a)redhat.com> - 1.1.1.2-2
+- doctest failing on s390x
+
+* Sat Feb 15 2020 Fedora Haskell SIG <haskell(a)lists.fedoraproject.org> - 1.1.1.2-1
+- spec file generated by cabal-rpm-2.0.2
diff --git a/sources b/sources
new file mode 100644
index 0000000..0093502
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+SHA512 (prettyprinter-ansi-terminal-1.1.1.2.tar.gz) = b2ac6c76ce6570b285370c9b1a466272aa5a3ba86a9f1de996392d750d212ff62a743e9c3c28f7de7951c9b270d64c97cb695166b65d642751942d682ff1a71b
4 years, 1 month
- 1
- 0
Architecture specific change in rpms/java-11-openjdk.git
by githook-noreply＠fedoraproject.org
The package rpms/java-11-openjdk.git has added or updated architecture specific content in its
spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s):
https://src.fedoraproject.org/cgit/rpms/java-11-openjdk.git/commit/?id=54...
https://src.fedoraproject.org/cgit/rpms/java-11-openjdk.git/commit/?id=a9....
Change:
+%ifarch s390x
+%ifnarch s390x
Thanks.
Full change:
============
commit 5dc89b39d73c24492ee31c7e39d5795709656833
Author: Severin Gehwolf <sgehwolf(a)redhat.com>
Date: Thu Feb 27 06:51:49 2020 +0100
Add changelog entry mentioning GCC 10 s390x workaround
diff --git a/java-11-openjdk.spec b/java-11-openjdk.spec
index 3294c6e..376340a 100644
--- a/java-11-openjdk.spec
+++ b/java-11-openjdk.spec
@@ -1845,6 +1845,9 @@ require "copy_jdk_configs.lua"
%changelog
+* Thu Feb 27 2020 Severin Gehwolf <sgehwolf(a)redhat.com> - 1:11.0.6.10-0
+- Add workaround for building with GCC 10 on s390x. See RHBZ#1799087
+
* Wed Jan 29 2020 Severin Gehwolf <sgehwolf(a)redhat.com> - 1:11.0.6.10-0
- Account for building with GCC 10: JDK-8224851, -fcommon switch.
commit a9ba2e1465c76efe72974b00c489ffb1c3d329b4
Author: Severin Gehwolf <sgehwolf(a)redhat.com>
Date: Fri Feb 14 20:36:16 2020 +0100
Disable gdb check temporarily on s390x
diff --git a/java-11-openjdk.spec b/java-11-openjdk.spec
index 82ecc54..3294c6e 100644
--- a/java-11-openjdk.spec
+++ b/java-11-openjdk.spec
@@ -1550,7 +1550,11 @@ quit
end
run -version
EOF
+# This fails on s390x for some reason. Disable for now. See:
+# https://koji.fedoraproject.org/koji/taskinfo?taskID=41499227
+%ifnarch s390x
grep 'JavaCallWrapper::JavaCallWrapper' gdb.out
+%endif
# Check src.zip has all sources. See RHBZ#1130490
jar -tf $JAVA_HOME/lib/src.zip | grep 'sun.misc.Unsafe'
commit 542fe92d09b15a8bebc22b612708073b40277365
Author: Severin Gehwolf <sgehwolf(a)redhat.com>
Date: Fri Feb 14 16:43:27 2020 +0100
Workaround GCC 10-based build failure on s390x
diff --git a/java-11-openjdk.spec b/java-11-openjdk.spec
index 80b4cf7..82ecc54 100644
--- a/java-11-openjdk.spec
+++ b/java-11-openjdk.spec
@@ -1362,11 +1362,16 @@ export ARCH_DATA_MODEL=64
export CFLAGS="$CFLAGS -mieee"
%endif
+GCC_10_WORKAROUND_S390x="-fno-tree-coalesce-vars -fno-tree-copy-prop -fno-tree-dce -fno-tree-dominator-opts -fno-tree-dse -fno-tree-forwprop -fno-tree-fre -fno-tree-loop-distribute-patterns -fno-tree-loop-distribution -fno-tree-loop-vectorize -fno-tree-partial-pre -fno-tree-phiprop -fno-tree-pre -fno-tree-pta -fno-tree-scev-cprop -fno-tree-sink -fno-tree-slp-vectorize -fno-tree-slsr -fno-tree-sra -fno-tree-switch-conversion -fno-tree-tail-merge -fno-tree-ter -fno-tree-vrp -fno-unit-at-a-time -fno-unswitch-loops -fno-vect-cost-model -fno-version-loops-for-strides"
# We use ourcppflags because the OpenJDK build seems to
# pass EXTRA_CFLAGS to the HotSpot C++ compiler...
# Explicitly set the C++ standard as the default has changed on GCC >= 6
EXTRA_CFLAGS="%ourcppflags -std=gnu++98 -Wno-error -fno-delete-null-pointer-checks -fno-lifetime-dse -fcommon"
EXTRA_CPP_FLAGS="%ourcppflags -std=gnu++98 -fno-delete-null-pointer-checks -fno-lifetime-dse -fcommon"
+%ifarch s390x
+EXTRA_CFLAGS="$EXTRA_CFLAGS $GCC_10_WORKAROUND_S390x"
+EXTRA_CPP_FLAGS="$EXTRA_CPP_FLAGS $GCC_10_WORKAROUND_S390x"
+%endif
%ifarch %{power64} ppc
# fix rpmlint warnings
4 years, 1 month
- 1
- 0
[Report] Packages Restricting Arches
by root
Package that edited their arches constraints (1)
=============================================
- nvml
was ExclusiveArch: x86_64
is ExclusiveArch: x86_64 ppc64le
List of packages currently excluding arches (2743)
===========================================
- 0ad
ExclusiveArch: %{ix86} x86_64 %{arm} aarch64 ppc64le
- 90-Second-Portraits
ExclusiveArch: %{arm} %{ix86} x86_64 %{mips} aarch64 ppc64
- GoldenCheetah
ExclusiveArch: %{qt5_qtwebengine_arches}
- GtkAda
ExclusiveArch: %{GPRbuild_arches}
- GtkAda3
ExclusiveArch: %{GPRbuild_arches}
- PragmARC
ExclusiveArch: %{GPRbuild_arches}
- R-V8
ExclusiveArch: %{nodejs_arches}
- RdRand
ExclusiveArch: %{ix86} x86_64
- SLOF
ExclusiveArch: ppc64le
- YafaRay
ExclusiveArch: %{ix86} x86_64
- aboot
ExclusiveArch: alpha
- acpid
ExclusiveArch: ia64 x86_64 %{ix86} %{arm} aarch64
- ahven
ExclusiveArch: %{GPRbuild_arches}
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ExclusiveArch: %{ix86} x86_64 ppc ppc64 ppc64le s390x %{arm} aarch64
- american-fuzzy-lop
ExclusiveArch: %{ix86} x86_64
- anet
ExclusiveArch: %{GPRbuild_arches}
- apmd
ExclusiveArch: %{ix86}
- appstream-generator
ExclusiveArch: x86_64 %{ix86} %{arm}
- arduino
ExclusiveArch: %{go_arches}
- arduino-builder
ExclusiveArch: %{go_arches}
- arm-trusted-firmware
ExclusiveArch: aarch64
- aunit
ExclusiveArch: %GPRbuild_arches
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ExclusiveArch: %{ldc_arches}
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ExclusiveArch: %GPRbuild_arches
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ExclusiveArch: %{mono_arches}
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- bareftp
ExclusiveArch: %{mono_arches}
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ExclusiveArch: x86_64 aarch64 ia64 ppc64 ppc64le s390x
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ExclusiveArch: x86_64 %{power64} aarch64 s390x
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ExclusiveArch: %{ix86} x86_64 %{arm} aarch64 %{mips}
- biosdevname
ExclusiveArch: %{ix86} x86_64
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ExclusiveArch: %mono_arches
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ExclusiveArch: %{mono_arches}
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ExclusiveArch: x86_64 %{power64} aarch64 s390x
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ExclusiveArch: x86_64
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ExclusiveArch: %{ix86} x86_64
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ExclusiveArch: %{qt5_qtwebengine_arches}
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ExclusiveArch: %{nodejs_arches} noarch
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ExclusiveArch: %{fpc_arches}
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ExclusiveArch: %{mono_arches}
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ExclusiveArch: x86_64 i686 aarch64
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ExclusiveArch: %{nodejs_arches}
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ExclusiveArch: %{ix86} x86_64
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ExclusiveArch: %{ix86} x86_64 ia64
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ExclusiveArch: %{nodejs_arches} noarch
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ExclusiveArch: %{ldc_arches}
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ExclusiveArch: x86_64 aarch64
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ExclusiveArch: %mono_arches
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ExclusiveArch: %mono_arches
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ExclusiveArch: i686 x86_64
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ExclusiveArch: %{ix86} x86_64 %{arm} aarch64
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ExclusiveArch: %{efi}
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ExclusiveArch: %{efi}
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ExclusiveArch: %{nodejs_arches} noarch
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ExclusiveArch: x86_64 %{ix86}
ExclusiveArch: x86_64 %{ix86} aarch64 %{arm} %{power64}
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ExclusiveArch: %{GPRbuild_arches}
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ExclusiveArch: %{arm} aarch64 %{ix86} x86_64 ppc64le
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ExclusiveArch: %{ix86} x86_64
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ExclusiveArch: %mono_arches
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ExclusiveArch: %mono_arches
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ExclusiveArch: %GPRbuild_arches
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ExclusiveArch: %{GNAT_arches}
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ExclusiveArch: %{qt5_qtwebengine_arches}
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ExclusiveArch: %mono_arches
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ExclusiveArch: %{?go_arches:%{go_arches}}%{!?go_arches:%{ix86} x86_64 aarch64 %{arm}}
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ExclusiveArch: %{mono_arches}
- gkeyfile-sharp
ExclusiveArch: %mono_arches
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ExclusiveArch: x86_64
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ExclusiveArch: %{ldc_arches}
- gmqcc
ExclusiveArch: %{ix86} x86_64 %{arm} aarch64
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ExclusiveArch: %{GPRbuild_arches}
- gnatcoll-bindings
ExclusiveArch: %{GPRbuild_arches}
- gnatcoll-db
ExclusiveArch: %{GPRbuild_arches}
- gnome-boxes
ExclusiveArch: x86_64
- gnome-desktop-sharp
ExclusiveArch: %mono_arches
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ExclusiveArch: %mono_arches
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ExclusiveArch: %{mono_arches}
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ExclusiveArch: %mono_arches
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ExclusiveArch: %{mono_arches}
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ExclusiveArch: %mono_arches
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ExclusiveArch: %mono_arches
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ExclusiveArch: %{efi}
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- go-compilers
ExclusiveArch: %{go_arches}
- go-rpm-macros
ExclusiveArch: %{golang_arches} %{gccgo_arches}
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ExclusiveArch: %{?go_arches:%{go_arches}}%{!?go_arches:%{ix86} x86_64 %{arm}}
- golang
ExclusiveArch: %{golang_arches}
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ExclusiveArch: %{?go_arches:%{go_arches}}%{!?go_arches:%{ix86} x86_64 %{arm}}
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ExclusiveArch: %{?go_arches:%{go_arches}}%{!?go_arches:%{ix86} x86_64 %{arm}}
ExclusiveArch: x86_64
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ExclusiveArch: %{GPRbuild_arches} %{bootstrap_arch}
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ExclusiveArch: %{nodejs_arches}
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ExclusiveArch: %{mono_arches}
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ExclusiveArch: %mono_arches
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ExclusiveArch: %{mono_arches}
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ExclusiveArch: %GPRbuild_arches
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ExclusiveArch: %{GPRbuild_arches}
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ExclusiveArch: %mono_arches
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ExclusiveArch: %mono_arches
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ExclusiveArch: %{mono_arches}
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ExclusiveArch: %mono_arches
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ExclusiveArch: x86_64
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ExclusiveArch: %mono_arches
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ExclusiveArch: %{nim_arches}
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4 years, 1 month
- 1
- 0
Architecture specific change in rpms/scorep.git
by githook-noreply＠fedoraproject.org
The package rpms/scorep.git has added or updated architecture specific content in its
spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s):
https://src.fedoraproject.org/cgit/rpms/scorep.git/commit/?id=e14a890f842....
Change:
+%ifarch aarch64
Thanks.
Full change:
============
commit e14a890f8422bb8cb1410bf766b849e5a1306e93
Author: Dave Love <loveshack(a)fedoraproject.org>
Date: Wed Feb 26 17:51:52 2020 +0000
- Bundle the recommended modified libunwind
- Fix FTBFS with binutils 2.34
- Don't try to build oshm on el8 aarch64
diff --git a/scorep.spec b/scorep.spec
index 10e24b7..81b966d 100644
--- a/scorep.spec
+++ b/scorep.spec
@@ -9,6 +9,9 @@
%global oshm 0
%endif
%endif
+%ifarch aarch64
+%{?el8:%global oshm 0}
+%endif
%global libuwcommit 5646a9b520c51bf6aaa86ae4c25289e30b7c3a41
%global libuwshort %(c=%{libuwcommit}; echo ${c:0:7})
@@ -457,9 +460,10 @@ make -C serial check V=1
%changelog
-* Mon Feb 24 2020 Dave love <loveshack(a)fedoraproject.org> - 6.0-7
+* Wed Feb 26 2020 Dave love <loveshack(a)fedoraproject.org> - 6.0-7
- Bundle the recommended modified libunwind
- Fix FTBFS with binutils 2.34
+- Don't try to build oshm on el8 aarch64
* Thu Jan 30 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 6.0-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
4 years, 1 month
- 1
- 0
Architecture specific change in rpms/nvml.git
by githook-noreply＠fedoraproject.org
The package rpms/nvml.git has added or updated architecture specific content in its
spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s):
https://src.fedoraproject.org/cgit/rpms/nvml.git/commit/?id=77fa7fc0e3cea....
Change:
+ExclusiveArch: x86_64 ppc64le
Thanks.
Full change:
============
commit 7ac6dfcf3bdf53b3ee063894e15a73cce36b3afe
Author: Marcin lusarz <marcin.slusarz(a)intel.com>
Date: Wed Feb 26 17:52:25 2020 +0100
Add ChangeLog for 1.8-2
diff --git a/nvml.spec b/nvml.spec
index 1c72a81..d47eaad 100644
--- a/nvml.spec
+++ b/nvml.spec
@@ -32,7 +32,7 @@
Name: nvml
Version: 1.8
-Release: 1%{?dist}
+Release: 2%{?dist}
Summary: Persistent Memory Development Kit (formerly NVML)
License: BSD
URL: http://pmem.io/pmdk
@@ -70,8 +70,12 @@ BuildRequires: libunwind-devel
%global __provides_exclude_from ^%{_libdir}/pmdk_debug/.*\\.so.*$
# By design, PMDK does not support any 32-bit architecture.
-# Due to dependency on xmmintrin.h and some inline assembly, it can be
-# compiled only for x86_64 at the moment.
+# Due to dependency on some inline assembly, PMDK can be compiled only
+# on these architectures:
+# - x86_64
+# - ppc64le (experimental)
+# - aarch64 (unmaintained, supporting hardware doesn't exist?)
+#
# Other 64-bit architectures could also be supported, if only there is
# a request for that, and if somebody provides the arch-specific
# implementation of the low-level routines for flushing to persistent
@@ -79,7 +83,6 @@ BuildRequires: libunwind-devel
# https://bugzilla.redhat.com/show_bug.cgi?id=1340634
# https://bugzilla.redhat.com/show_bug.cgi?id=1340635
-# https://bugzilla.redhat.com/show_bug.cgi?id=1340636
# https://bugzilla.redhat.com/show_bug.cgi?id=1340637
ExclusiveArch: x86_64 ppc64le
@@ -602,6 +605,9 @@ cp utils/pmdk.magic %{buildroot}%{_datadir}/pmdk/
%changelog
+* Wed Feb 26 2020 Marcin lusarz <marcin.slusarz(a)intel.com> - 1.8-2
+- Enable PPC64LE packages
+
* Wed Feb 12 2020 Marcin lusarz <marcin.slusarz(a)intel.com> - 1.8-1
- Update to PMDK version 1.8. This release stops shipping
libvmem & libvmmalloc. These libraries are now provided by vmem
commit 77fa7fc0e3ceae7cac61ad7fc153e1be1590ecd5
Author: Lucas A. M. Magalhaes <lamm(a)linux.ibm.com>
Date: Mon Feb 17 17:48:05 2020 -0300
Add ppc64le package
diff --git a/nvml.spec b/nvml.spec
index e6df7db..1c72a81 100644
--- a/nvml.spec
+++ b/nvml.spec
@@ -82,7 +82,7 @@ BuildRequires: libunwind-devel
# https://bugzilla.redhat.com/show_bug.cgi?id=1340636
# https://bugzilla.redhat.com/show_bug.cgi?id=1340637
-ExclusiveArch: x86_64
+ExclusiveArch: x86_64 ppc64le
%description
The Persistent Memory Development Kit is a collection of libraries for
commit f5e3e301bba3bf05ee872678217e48fc12781513
Author: Marcin lusarz <marcin.slusarz(a)intel.com>
Date: Wed Feb 26 17:09:15 2020 +0100
Add another patch for timeouts on PPC64.
diff --git a/0003-test-build-obj_defrag_advanced-with-some-optimizatio.patch b/0003-test-build-obj_defrag_advanced-with-some-optimizatio.patch
new file mode 100644
index 0000000..58ff8a3
--- /dev/null
+++ b/0003-test-build-obj_defrag_advanced-with-some-optimizatio.patch
@@ -0,0 +1,24 @@
+From ad2064dbb457482f9af9816f61ba721cc5aae126 Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Marcin=20=C5=9Alusarz?= <marcin.slusarz(a)intel.com>
+Date: Wed, 26 Feb 2020 15:54:19 +0100
+Subject: [PATCH] test: build obj_defrag_advanced with some optimizations
+
+On my machine it decreases TEST3 time from 52s to 20s
+and TEST5 from 30s to 11s.
+---
+ src/test/obj_defrag_advanced/Makefile | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/src/test/obj_defrag_advanced/Makefile b/src/test/obj_defrag_advanced/Makefile
+index f2e8eda94..45fa851aa 100644
+--- a/src/test/obj_defrag_advanced/Makefile
++++ b/src/test/obj_defrag_advanced/Makefile
+@@ -40,4 +40,4 @@ LIBPMEMOBJ=y
+
+ include ../Makefile.inc
+
+-CFLAGS += -DDEBUG
++CFLAGS += -DDEBUG -Og
+--
+2.20.1
+
diff --git a/nvml.spec b/nvml.spec
index 79cba1b..e6df7db 100644
--- a/nvml.spec
+++ b/nvml.spec
@@ -40,6 +40,7 @@ URL: http://pmem.io/pmdk
Source0: https://github.com/pmem/pmdk/releases/download/%{upstreamversion}/pmdk-%{...
Patch0: 0001-test-py-add-require_free_space.patch
Patch1: 0002-test-Fix-obj_zones-for-ppc64le.patch
+Patch2: 0003-test-build-obj_defrag_advanced-with-some-optimizatio.patch
BuildRequires: gcc
BuildRequires: make
@@ -530,6 +531,7 @@ provided in the command line options to check whether files are in a consistent
%setup -q -n pmdk-%{upstreamversion}
%patch0 -p1
%patch1 -p1
+%patch2 -p1
%build
commit 0116788efd1a5e2e815514690a732290bb9b52fc
Author: Marcin lusarz <marcin.slusarz(a)intel.com>
Date: Tue Feb 25 19:04:33 2020 +0100
Add patch for timeouts on PPC64
diff --git a/0002-test-Fix-obj_zones-for-ppc64le.patch b/0002-test-Fix-obj_zones-for-ppc64le.patch
new file mode 100644
index 0000000..19f4d54
--- /dev/null
+++ b/0002-test-Fix-obj_zones-for-ppc64le.patch
@@ -0,0 +1,38 @@
+From 0d72150d0f1e6d52c3b8888500fbcce64c751362 Mon Sep 17 00:00:00 2001
+From: "Lucas A. M. Magalhaes" <lamm(a)linux.ibm.com>
+Date: Fri, 21 Feb 2020 09:40:28 -0300
+Subject: [PATCH] test: Fix obj_zones for ppc64le
+
+This test was timing out because of intensive page_fault
+handling. By allocating more by each loop we minimize this
+issue.
+
+Signed-off-by: Lucas A. M. Magalhaes <lamm(a)linux.ibm.com>
+---
+ src/test/obj_zones/obj_zones.c | 3 ++-
+ 1 file changed, 2 insertions(+), 1 deletion(-)
+
+diff --git a/src/test/obj_zones/obj_zones.c b/src/test/obj_zones/obj_zones.c
+index c1d84268a..3cc796beb 100644
+--- a/src/test/obj_zones/obj_zones.c
++++ b/src/test/obj_zones/obj_zones.c
+@@ -36,6 +36,7 @@
+ */
+
+ #include <stddef.h>
++#include <page_size.h>
+
+ #include "unittest.h"
+
+@@ -104,7 +105,7 @@ test_malloc_free(const char *path)
+ 0, S_IWUSR | S_IRUSR)) == NULL)
+ UT_FATAL("!pmemobj_create: %s", path);
+
+- size_t alloc_size = 128 * 1024;
++ size_t alloc_size = PMEM_PAGESIZE * 32;
+ size_t max_allocs = 1000000;
+ PMEMoid *oid = MALLOC(sizeof(PMEMoid) * max_allocs);
+ size_t n = 0;
+--
+2.20.1
+
diff --git a/nvml.spec b/nvml.spec
index 6d988dc..79cba1b 100644
--- a/nvml.spec
+++ b/nvml.spec
@@ -39,6 +39,7 @@ URL: http://pmem.io/pmdk
Source0: https://github.com/pmem/pmdk/releases/download/%{upstreamversion}/pmdk-%{...
Patch0: 0001-test-py-add-require_free_space.patch
+Patch1: 0002-test-Fix-obj_zones-for-ppc64le.patch
BuildRequires: gcc
BuildRequires: make
@@ -528,6 +529,7 @@ provided in the command line options to check whether files are in a consistent
%prep
%setup -q -n pmdk-%{upstreamversion}
%patch0 -p1
+%patch1 -p1
%build
commit aa6b3b4baec9feb76a6c3cc4077a571dae79336c
Author: Marcin lusarz <marcin.slusarz(a)intel.com>
Date: Tue Feb 18 15:58:49 2020 +0100
Also run Python tests
diff --git a/0001-test-py-add-require_free_space.patch b/0001-test-py-add-require_free_space.patch
new file mode 100644
index 0000000..1be4bfe
--- /dev/null
+++ b/0001-test-py-add-require_free_space.patch
@@ -0,0 +1,70 @@
+From 2bfc80d85248ed0014e396c2cab4b8ffb60e470e Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Marcin=20=C5=9Alusarz?= <marcin.slusarz(a)intel.com>
+Date: Tue, 18 Feb 2020 15:51:12 +0100
+Subject: [PATCH] test: (py) add require_free_space
+
+---
+ src/test/obj_defrag_advanced/TESTS.py | 4 ++++
+ src/test/unittest/context.py | 11 ++++++++---
+ 2 files changed, 12 insertions(+), 3 deletions(-)
+
+diff --git a/src/test/obj_defrag_advanced/TESTS.py b/src/test/obj_defrag_advanced/TESTS.py
+index 8979af4a5..daf7d8ecc 100755
+--- a/src/test/obj_defrag_advanced/TESTS.py
++++ b/src/test/obj_defrag_advanced/TESTS.py
+@@ -49,6 +49,8 @@ class ObjDefragAdvanced(t.BaseTest):
+ min_root_size = 0
+
+ def run(self, ctx):
++ ctx.require_free_space(self.pool_size)
++
+ path = ctx.create_holey_file(self.pool_size, 'testfile')
+ dump1 = 'dump1.log'
+ dump2 = 'dump2.log'
+@@ -98,6 +100,8 @@ class ObjDefragAdvancedMt(ObjDefragAdvanced):
+ ncycles = 2
+
+ def run(self, ctx):
++ ctx.require_free_space(self.pool_size)
++
+ path = ctx.create_holey_file(self.pool_size, 'testfile')
+
+ ctx.exec('obj_defrag_advanced',
+diff --git a/src/test/unittest/context.py b/src/test/unittest/context.py
+index 00a35fba3..2b326ebce 100644
+--- a/src/test/unittest/context.py
++++ b/src/test/unittest/context.py
+@@ -1,5 +1,5 @@
+ #
+-# Copyright 2019, Intel Corporation
++# Copyright 2019-2020, Intel Corporation
+ #
+ # Redistribution and use in source and binary forms, with or without
+ # modification, are permitted provided that the following conditions
+@@ -136,9 +136,9 @@ class ContextBase:
+ return int(proc.stdout)
+ futils.fail('Could not get size of the file, it is inaccessible or does not exist')
+
+- def get_free_space(self):
++ def get_free_space(self, dir="."):
+ """Returns free space for current file system"""
+- _, _, free = shutil.disk_usage(".")
++ _, _, free = shutil.disk_usage(dir)
+ return free
+
+
+@@ -187,6 +187,11 @@ class Context(ContextBase):
+ os.chmod(filepath, mode)
+ return filepath
+
++ def require_free_space(self, space):
++ if self.get_free_space(self.testdir) < space:
++ futils.skip('Not enough free space (' + str(space / 1024 / 1024) +
++ ' MiB required)')
++
+ def mkdirs(self, path, mode=None):
+ """
+ Creates directory along with all parent directories required. In the
+--
+2.17.2
+
diff --git a/nvml.spec b/nvml.spec
index a043993..6d988dc 100644
--- a/nvml.spec
+++ b/nvml.spec
@@ -2,7 +2,6 @@
# rpmbuild options:
# --with | --without fabric
# --with | --without ndctl
-# --define _testconfig <path to custom testconfig.sh>
# do not terminate build if files in the $RPM_BUILD_ROOT
# directory are not found in %%files (without fabric case)
@@ -39,6 +38,7 @@ License: BSD
URL: http://pmem.io/pmdk
Source0: https://github.com/pmem/pmdk/releases/download/%{upstreamversion}/pmdk-%{...
+Patch0: 0001-test-py-add-require_free_space.patch
BuildRequires: gcc
BuildRequires: make
@@ -47,6 +47,7 @@ BuildRequires: autoconf
BuildRequires: automake
BuildRequires: man
BuildRequires: pkgconfig
+BuildRequires: python3
%if %{with ndctl}
BuildRequires: ndctl-devel >= %{min_ndctl_ver}
@@ -526,6 +527,7 @@ provided in the command line options to check whether files are in a consistent
%prep
%setup -q -n pmdk-%{upstreamversion}
+%patch0 -p1
%build
@@ -556,13 +558,27 @@ cp utils/pmdk.magic %{buildroot}%{_datadir}/pmdk/
%if 0%{?_skip_check} == 1
echo "Check skipped"
%else
- %if %{defined _testconfig}
- cp %{_testconfig} src/test/testconfig.sh
- %else
- echo "PMEM_FS_DIR=/tmp" > src/test/testconfig.sh
- echo "PMEM_FS_DIR_FORCE_PMEM=1" >> src/test/testconfig.sh
- echo 'TEST_BUILD="debug nondebug"' >> src/test/testconfig.sh
- %endif
+ echo "PMEM_FS_DIR=/tmp" > src/test/testconfig.sh
+ echo "PMEM_FS_DIR_FORCE_PMEM=1" >> src/test/testconfig.sh
+ echo 'TEST_BUILD="debug nondebug"' >> src/test/testconfig.sh
+ echo "TM=1" >> src/test/testconfig.sh
+
+ echo "config = {" > src/test/testconfig.py
+ echo " 'pmem_fs_dir': '/tmp'," >> src/test/testconfig.py
+ echo " 'fs_dir_force_pmem': 1," >> src/test/testconfig.py
+ echo " 'build': ['debug', 'release']," >> src/test/testconfig.py
+ echo " 'tm': 1," >> src/test/testconfig.py
+ echo " 'test_type': 'check'," >> src/test/testconfig.py
+ echo " 'fs': 'all'," >> src/test/testconfig.py
+ echo " 'unittest_log_level': 1," >> src/test/testconfig.py
+ echo " 'keep_going': False," >> src/test/testconfig.py
+ echo " 'timeout': '3m'," >> src/test/testconfig.py
+ echo " 'dump_lines': 30," >> src/test/testconfig.py
+ echo " 'force_enable': None," >> src/test/testconfig.py
+ echo " 'device_dax_path': []," >> src/test/testconfig.py
+ echo "}" >> src/test/testconfig.py
+
+ make pycheck
make check
%endif
4 years, 1 month
- 1
- 0
Architecture specific change in rpms/nvml.git
by githook-noreply＠fedoraproject.org
The package rpms/nvml.git has added or updated architecture specific content in its
spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s):
https://src.fedoraproject.org/cgit/rpms/nvml.git/commit/?id=77fa7fc0e3cea....
Change:
+ExclusiveArch: x86_64 ppc64le
Thanks.
Full change:
============
commit 7ac6dfcf3bdf53b3ee063894e15a73cce36b3afe
Author: Marcin lusarz <marcin.slusarz(a)intel.com>
Date: Wed Feb 26 17:52:25 2020 +0100
Add ChangeLog for 1.8-2
diff --git a/nvml.spec b/nvml.spec
index 1c72a81..d47eaad 100644
--- a/nvml.spec
+++ b/nvml.spec
@@ -32,7 +32,7 @@
Name: nvml
Version: 1.8
-Release: 1%{?dist}
+Release: 2%{?dist}
Summary: Persistent Memory Development Kit (formerly NVML)
License: BSD
URL: http://pmem.io/pmdk
@@ -70,8 +70,12 @@ BuildRequires: libunwind-devel
%global __provides_exclude_from ^%{_libdir}/pmdk_debug/.*\\.so.*$
# By design, PMDK does not support any 32-bit architecture.
-# Due to dependency on xmmintrin.h and some inline assembly, it can be
-# compiled only for x86_64 at the moment.
+# Due to dependency on some inline assembly, PMDK can be compiled only
+# on these architectures:
+# - x86_64
+# - ppc64le (experimental)
+# - aarch64 (unmaintained, supporting hardware doesn't exist?)
+#
# Other 64-bit architectures could also be supported, if only there is
# a request for that, and if somebody provides the arch-specific
# implementation of the low-level routines for flushing to persistent
@@ -79,7 +83,6 @@ BuildRequires: libunwind-devel
# https://bugzilla.redhat.com/show_bug.cgi?id=1340634
# https://bugzilla.redhat.com/show_bug.cgi?id=1340635
-# https://bugzilla.redhat.com/show_bug.cgi?id=1340636
# https://bugzilla.redhat.com/show_bug.cgi?id=1340637
ExclusiveArch: x86_64 ppc64le
@@ -602,6 +605,9 @@ cp utils/pmdk.magic %{buildroot}%{_datadir}/pmdk/
%changelog
+* Wed Feb 26 2020 Marcin lusarz <marcin.slusarz(a)intel.com> - 1.8-2
+- Enable PPC64LE packages
+
* Wed Feb 12 2020 Marcin lusarz <marcin.slusarz(a)intel.com> - 1.8-1
- Update to PMDK version 1.8. This release stops shipping
libvmem & libvmmalloc. These libraries are now provided by vmem
commit 77fa7fc0e3ceae7cac61ad7fc153e1be1590ecd5
Author: Lucas A. M. Magalhaes <lamm(a)linux.ibm.com>
Date: Mon Feb 17 17:48:05 2020 -0300
Add ppc64le package
diff --git a/nvml.spec b/nvml.spec
index e6df7db..1c72a81 100644
--- a/nvml.spec
+++ b/nvml.spec
@@ -82,7 +82,7 @@ BuildRequires: libunwind-devel
# https://bugzilla.redhat.com/show_bug.cgi?id=1340636
# https://bugzilla.redhat.com/show_bug.cgi?id=1340637
-ExclusiveArch: x86_64
+ExclusiveArch: x86_64 ppc64le
%description
The Persistent Memory Development Kit is a collection of libraries for
commit f5e3e301bba3bf05ee872678217e48fc12781513
Author: Marcin lusarz <marcin.slusarz(a)intel.com>
Date: Wed Feb 26 17:09:15 2020 +0100
Add another patch for timeouts on PPC64.
diff --git a/0003-test-build-obj_defrag_advanced-with-some-optimizatio.patch b/0003-test-build-obj_defrag_advanced-with-some-optimizatio.patch
new file mode 100644
index 0000000..58ff8a3
--- /dev/null
+++ b/0003-test-build-obj_defrag_advanced-with-some-optimizatio.patch
@@ -0,0 +1,24 @@
+From ad2064dbb457482f9af9816f61ba721cc5aae126 Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Marcin=20=C5=9Alusarz?= <marcin.slusarz(a)intel.com>
+Date: Wed, 26 Feb 2020 15:54:19 +0100
+Subject: [PATCH] test: build obj_defrag_advanced with some optimizations
+
+On my machine it decreases TEST3 time from 52s to 20s
+and TEST5 from 30s to 11s.
+---
+ src/test/obj_defrag_advanced/Makefile | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/src/test/obj_defrag_advanced/Makefile b/src/test/obj_defrag_advanced/Makefile
+index f2e8eda94..45fa851aa 100644
+--- a/src/test/obj_defrag_advanced/Makefile
++++ b/src/test/obj_defrag_advanced/Makefile
+@@ -40,4 +40,4 @@ LIBPMEMOBJ=y
+
+ include ../Makefile.inc
+
+-CFLAGS += -DDEBUG
++CFLAGS += -DDEBUG -Og
+--
+2.20.1
+
diff --git a/nvml.spec b/nvml.spec
index 79cba1b..e6df7db 100644
--- a/nvml.spec
+++ b/nvml.spec
@@ -40,6 +40,7 @@ URL: http://pmem.io/pmdk
Source0: https://github.com/pmem/pmdk/releases/download/%{upstreamversion}/pmdk-%{...
Patch0: 0001-test-py-add-require_free_space.patch
Patch1: 0002-test-Fix-obj_zones-for-ppc64le.patch
+Patch2: 0003-test-build-obj_defrag_advanced-with-some-optimizatio.patch
BuildRequires: gcc
BuildRequires: make
@@ -530,6 +531,7 @@ provided in the command line options to check whether files are in a consistent
%setup -q -n pmdk-%{upstreamversion}
%patch0 -p1
%patch1 -p1
+%patch2 -p1
%build
commit 0116788efd1a5e2e815514690a732290bb9b52fc
Author: Marcin lusarz <marcin.slusarz(a)intel.com>
Date: Tue Feb 25 19:04:33 2020 +0100
Add patch for timeouts on PPC64
diff --git a/0002-test-Fix-obj_zones-for-ppc64le.patch b/0002-test-Fix-obj_zones-for-ppc64le.patch
new file mode 100644
index 0000000..19f4d54
--- /dev/null
+++ b/0002-test-Fix-obj_zones-for-ppc64le.patch
@@ -0,0 +1,38 @@
+From 0d72150d0f1e6d52c3b8888500fbcce64c751362 Mon Sep 17 00:00:00 2001
+From: "Lucas A. M. Magalhaes" <lamm(a)linux.ibm.com>
+Date: Fri, 21 Feb 2020 09:40:28 -0300
+Subject: [PATCH] test: Fix obj_zones for ppc64le
+
+This test was timing out because of intensive page_fault
+handling. By allocating more by each loop we minimize this
+issue.
+
+Signed-off-by: Lucas A. M. Magalhaes <lamm(a)linux.ibm.com>
+---
+ src/test/obj_zones/obj_zones.c | 3 ++-
+ 1 file changed, 2 insertions(+), 1 deletion(-)
+
+diff --git a/src/test/obj_zones/obj_zones.c b/src/test/obj_zones/obj_zones.c
+index c1d84268a..3cc796beb 100644
+--- a/src/test/obj_zones/obj_zones.c
++++ b/src/test/obj_zones/obj_zones.c
+@@ -36,6 +36,7 @@
+ */
+
+ #include <stddef.h>
++#include <page_size.h>
+
+ #include "unittest.h"
+
+@@ -104,7 +105,7 @@ test_malloc_free(const char *path)
+ 0, S_IWUSR | S_IRUSR)) == NULL)
+ UT_FATAL("!pmemobj_create: %s", path);
+
+- size_t alloc_size = 128 * 1024;
++ size_t alloc_size = PMEM_PAGESIZE * 32;
+ size_t max_allocs = 1000000;
+ PMEMoid *oid = MALLOC(sizeof(PMEMoid) * max_allocs);
+ size_t n = 0;
+--
+2.20.1
+
diff --git a/nvml.spec b/nvml.spec
index 6d988dc..79cba1b 100644
--- a/nvml.spec
+++ b/nvml.spec
@@ -39,6 +39,7 @@ URL: http://pmem.io/pmdk
Source0: https://github.com/pmem/pmdk/releases/download/%{upstreamversion}/pmdk-%{...
Patch0: 0001-test-py-add-require_free_space.patch
+Patch1: 0002-test-Fix-obj_zones-for-ppc64le.patch
BuildRequires: gcc
BuildRequires: make
@@ -528,6 +529,7 @@ provided in the command line options to check whether files are in a consistent
%prep
%setup -q -n pmdk-%{upstreamversion}
%patch0 -p1
+%patch1 -p1
%build
4 years, 1 month
- 1
- 0
Architecture specific change in rpms/arbor.git
by githook-noreply＠fedoraproject.org
The package rpms/arbor.git has added or updated architecture specific content in its
spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s):
https://src.fedoraproject.org/cgit/rpms/arbor.git/commit/?id=106e0717de9d...
https://src.fedoraproject.org/cgit/rpms/arbor.git/commit/?id=77288ee3fbf9....
Change:
+%ifarch x86_64 i686 aarch64
+ExcludeArch: mips64r2 mips32r2 s390 s390x
Thanks.
Full change:
============
commit 77288ee3fbf9a1800f6aed8ca1975fbc7bc074a0
Author: Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur(a)gmail.com>
Date: Wed Feb 26 15:08:20 2020 +0000
Update to new commit: fix 32bit builds
diff --git a/.gitignore b/.gitignore
index aa03300..80f2251 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,2 +1,3 @@
/arbor-0.2.2.tar.gz
/arbor-f12f934.tar.gz
+/arbor-fb5d4ea.tar.gz
diff --git a/0001-Correct-isnan-invocation.patch b/0001-Correct-isnan-invocation.patch
deleted file mode 100644
index 5c44296..0000000
--- a/0001-Correct-isnan-invocation.patch
+++ /dev/null
@@ -1,49 +0,0 @@
-From 3207c57635f44f7d38a2e630739d846369779297 Mon Sep 17 00:00:00 2001
-From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur(a)gmail.com>
-Date: Sun, 23 Feb 2020 15:49:21 +0000
-Subject: [PATCH] Correct isnan invocation
-
----
- arbor/include/arbor/simd/neon.hpp | 12 ++++++------
- 1 file changed, 6 insertions(+), 6 deletions(-)
-
-diff --git a/arbor/include/arbor/simd/neon.hpp b/arbor/include/arbor/simd/neon.hpp
-index 22ae0e7..3857999 100644
---- a/arbor/include/arbor/simd/neon.hpp
-+++ b/arbor/include/arbor/simd/neon.hpp
-@@ -397,8 +397,8 @@ struct neon_double2 : implbase<neon_double2> {
- auto is_small = cmp_lt(x, broadcast(exp_minarg));
-
- bool a[2];
-- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-- a[1] = isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
-+ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-+ a[1] = std::isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
-
- auto is_nan = mask_copy_from(a);
-
-@@ -445,8 +445,8 @@ struct neon_double2 : implbase<neon_double2> {
- auto is_small = cmp_lt(x, broadcast(expm1_minarg));
-
- bool a[2];
-- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-- a[1] = isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
-+ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-+ a[1] = std::isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
-
- auto is_nan = mask_copy_from(a);
-
-@@ -515,8 +515,8 @@ struct neon_double2 : implbase<neon_double2> {
- auto is_domainerr = cmp_lt(x, broadcast(0));
-
- bool a[2];
-- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-- a[1] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-+ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-+ a[1] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-
- auto is_nan = mask_copy_from(a);
- is_domainerr = logical_or(is_nan, is_domainerr);
---
-2.24.1
-
diff --git a/arbor.spec b/arbor.spec
index 5231c99..3b3dae4 100644
--- a/arbor.spec
+++ b/arbor.spec
@@ -19,14 +19,14 @@ Documentation is available at https://arbor.readthedocs.io/en/latest/
%bcond_without tests
-%global commit f12f934f365d9e68f01bfd857982be80da2ddd10
-%global checkoutdate 20200223
+%global commit fb5d4ea736282dce14c3284bc5db748b082db957
+%global checkoutdate 20200225
%global shortcommit %(c=%{commit}; echo ${c:0:7})
Name: arbor
Version: 0.2.2
-Release: 5.%{checkoutdate}git%{commit}%{?dist}
+Release: 6.%{checkoutdate}git%{commit}%{?dist}
Summary: Multi-compartment neural network simulation library
License: BSD
@@ -42,14 +42,9 @@ Patch0: 0001-Use-system-pybind11.patch
# Include missing header
# https://github.com/arbor-sim/arbor/pull/963
Patch1: 0001-Include-required-header.patch
-# Correct isnan invocation
-# https://github.com/arbor-sim/arbor/pull/964
-Patch2: 0001-Correct-isnan-invocation.patch
# Random123 does not support these
-# arbor fails to build on i686: error: static assertion failed: size_t is not the same as unsigned long or unsigned long long
-# https://github.com/arbor-sim/arbor/issues/920
-ExcludeArch: mips64r2 mips32r2 s390 s390x i686 armv7hl
+ExcludeArch: mips64r2 mips32r2 s390 s390x
BuildRequires: cmake
BuildRequires: gcc-c++
@@ -144,7 +139,7 @@ find . -type f -name "CMakeLists.txt" -exec sed -i -e 's/ext-tclap//' -e 's/ext-
# Correct Python shebangs in all files
find . -type f -name "*" -exec sed -i 's|^#![ ]*/usr/bin/env.*python.*$|#!/usr/bin/python3|' {} 2>/dev/null ';'
# We set it, remove the hard coded bits from CMakeLists.txt
-sed -i '/set(ARB_PYEXECDIR/ d' python/CMakeLists.txt
+sed -i '/set(arb_pyexecdir/ d' python/CMakeLists.txt
# builddir for serial
mkdir build-serial
@@ -188,7 +183,7 @@ pushd build$MPI_COMPILE_TYPE &&
-DARB_ARCH:STRING="native" \\\
-DCMAKE_INSTALL_LIBDIR=%{_lib} \\\
-DARB_WITH_PYTHON:BOOL=ON \\\
- -DARB_PYEXECDIR:STRING=$MPI_PYTHON3_SITEARCH \\\
+ -Darb_pyexecdir:STRING=$MPI_PYTHON3_SITEARCH \\\
%if "%{_lib}" == "lib64"
-DLIB_SUFFIX=64 .. &&
%else
@@ -324,7 +319,7 @@ popd
%license LICENSE
%doc README.md
%{_bindir}/modcc
-%{python3_sitearch}/%{name}.cpython-%{python3_version_nodots}*.so
+%{python3_sitearch}/%{name}
%files devel
@@ -344,7 +339,7 @@ popd
%doc README.md
%license LICENSE
%{_libdir}/mpich/bin/modcc_mpich
-%{python3_sitearch}/mpich/%{name}.cpython-%{python3_version_nodots}*.so
+%{python3_sitearch}/mpich/%{name}
%files mpich-devel
%{_libdir}/mpich/include/%{name}
@@ -359,7 +354,7 @@ popd
%doc README.md
%license LICENSE
%{_libdir}/openmpi/bin/modcc_openmpi
-%{python3_sitearch}/openmpi/%{name}.cpython-%{python3_version_nodots}*.so
+%{python3_sitearch}/openmpi/%{name}
%files openmpi-devel
%{_libdir}/openmpi/include/%{name}
@@ -370,6 +365,11 @@ popd
%endif
%changelog
+* Wed Feb 26 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-5.20200226gitfb5d4ea736282dce14c3284bc5db748b082db957
+- Use new snapshot that fixes errors on 32 bit systems
+- No longer excludes i686 and armv7hl
+- Drop unneeded patch.
+
* Sun Feb 23 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-5.20200223gitf12f934f365d9e68f01bfd857982be80da2ddd10
- Build from latest upstream snapshot
- Freshen patch
diff --git a/sources b/sources
index 8aa8f1f..1d28e53 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-SHA512 (arbor-f12f934.tar.gz) = a08e192ab627939159862c597dd00267f7cfad9bf27e7eca674e9598ac758e9eda2a573bbb47ece839f5d8f9604551bf274f9ced873d98e9b93ffa3bc2efdaae
+SHA512 (arbor-fb5d4ea.tar.gz) = d514ad36a63820cab543b19adf1f63218decfa7d6e9f8726178d90668c59952bde4daba91699c93b9678da4f42313050a8799ec58a5e78ef7d7f86a681ffc8b0
commit 106e0717de9d53bad8ce92230da133f3b839cabc
Author: Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur(a)gmail.com>
Date: Sun Feb 23 17:44:12 2020 +0000
Fix build using snapshot
diff --git a/.gitignore b/.gitignore
index 23af82b..aa03300 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1 +1,2 @@
/arbor-0.2.2.tar.gz
+/arbor-f12f934.tar.gz
diff --git a/0001-Correct-isnan-invocation.patch b/0001-Correct-isnan-invocation.patch
new file mode 100644
index 0000000..5c44296
--- /dev/null
+++ b/0001-Correct-isnan-invocation.patch
@@ -0,0 +1,49 @@
+From 3207c57635f44f7d38a2e630739d846369779297 Mon Sep 17 00:00:00 2001
+From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur(a)gmail.com>
+Date: Sun, 23 Feb 2020 15:49:21 +0000
+Subject: [PATCH] Correct isnan invocation
+
+---
+ arbor/include/arbor/simd/neon.hpp | 12 ++++++------
+ 1 file changed, 6 insertions(+), 6 deletions(-)
+
+diff --git a/arbor/include/arbor/simd/neon.hpp b/arbor/include/arbor/simd/neon.hpp
+index 22ae0e7..3857999 100644
+--- a/arbor/include/arbor/simd/neon.hpp
++++ b/arbor/include/arbor/simd/neon.hpp
+@@ -397,8 +397,8 @@ struct neon_double2 : implbase<neon_double2> {
+ auto is_small = cmp_lt(x, broadcast(exp_minarg));
+
+ bool a[2];
+- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
+- a[1] = isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
++ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
++ a[1] = std::isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
+
+ auto is_nan = mask_copy_from(a);
+
+@@ -445,8 +445,8 @@ struct neon_double2 : implbase<neon_double2> {
+ auto is_small = cmp_lt(x, broadcast(expm1_minarg));
+
+ bool a[2];
+- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
+- a[1] = isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
++ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
++ a[1] = std::isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
+
+ auto is_nan = mask_copy_from(a);
+
+@@ -515,8 +515,8 @@ struct neon_double2 : implbase<neon_double2> {
+ auto is_domainerr = cmp_lt(x, broadcast(0));
+
+ bool a[2];
+- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
+- a[1] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
++ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
++ a[1] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
+
+ auto is_nan = mask_copy_from(a);
+ is_domainerr = logical_or(is_nan, is_domainerr);
+--
+2.24.1
+
diff --git a/0001-Include-required-header.patch b/0001-Include-required-header.patch
new file mode 100644
index 0000000..fc607a8
--- /dev/null
+++ b/0001-Include-required-header.patch
@@ -0,0 +1,24 @@
+From 015bce3b60da23b18b308c6b758b463650cff397 Mon Sep 17 00:00:00 2001
+From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur(a)gmail.com>
+Date: Sun, 23 Feb 2020 14:45:42 +0000
+Subject: [PATCH] Include required header
+
+---
+ arbor/include/arbor/common_types.hpp | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/arbor/include/arbor/common_types.hpp b/arbor/include/arbor/common_types.hpp
+index de9dc37..d756467 100644
+--- a/arbor/include/arbor/common_types.hpp
++++ b/arbor/include/arbor/common_types.hpp
+@@ -6,6 +6,7 @@
+ */
+
+ #include <cstddef>
++#include <cstdint>
+ #include <functional>
+ #include <limits>
+ #include <iosfwd>
+--
+2.24.1
+
diff --git a/0001-Use-system-pybind11.patch b/0001-Use-system-pybind11.patch
index 494137a..a385645 100644
--- a/0001-Use-system-pybind11.patch
+++ b/0001-Use-system-pybind11.patch
@@ -1,4 +1,4 @@
-From f33575182f8780ce3281e65916d05529a9b861e5 Mon Sep 17 00:00:00 2001
+From 26f74e228ebd1840befa4122d4f36840104a2380 Mon Sep 17 00:00:00 2001
From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur(a)gmail.com>
Date: Sat, 7 Dec 2019 16:58:38 +0000
Subject: [PATCH] Use system pybind11
@@ -8,7 +8,7 @@ Subject: [PATCH] Use system pybind11
1 file changed, 3 insertions(+), 11 deletions(-)
diff --git a/python/CMakeLists.txt b/python/CMakeLists.txt
-index 063c514..b0552bd 100644
+index bf4d5f0..0057102 100644
--- a/python/CMakeLists.txt
+++ b/python/CMakeLists.txt
@@ -1,18 +1,10 @@
@@ -31,8 +31,8 @@ index 063c514..b0552bd 100644
-set(PYBIND11_CPP_STANDARD -std=c++14)
-add_subdirectory(pybind11)
- # The Python library. MODULE will make a Python-exclusive model.
- add_library(pyarb MODULE
+ set(pyarb_source
+ cells.cpp
--
-2.23.0
+2.24.1
diff --git a/18e3a0586deb64c6fbd55fc6f98290466c176319.patch b/18e3a0586deb64c6fbd55fc6f98290466c176319.patch
deleted file mode 100644
index 1844678..0000000
--- a/18e3a0586deb64c6fbd55fc6f98290466c176319.patch
+++ /dev/null
@@ -1,53 +0,0 @@
-From 18e3a0586deb64c6fbd55fc6f98290466c176319 Mon Sep 17 00:00:00 2001
-From: Sam Yates <halfflat(a)gmail.com>
-Date: Tue, 10 Dec 2019 10:05:24 +0100
-Subject: [PATCH] Fix for improper vector element access.
-
-Fixes #917.
-
-* Avoid use of empty ranges determined by expressions `&vector[i]` where i equals vector.size(). Replace with expressions using `vector.data()` or subrange views.
----
- arbor/backends/gpu/multi_event_stream.hpp | 2 +-
- arbor/backends/multicore/multi_event_stream.hpp | 2 +-
- arbor/include/arbor/schedule.hpp | 2 +-
- 3 files changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/arbor/backends/gpu/multi_event_stream.hpp b/arbor/backends/gpu/multi_event_stream.hpp
-index 82842558..929c325d 100644
---- a/arbor/backends/gpu/multi_event_stream.hpp
-+++ b/arbor/backends/gpu/multi_event_stream.hpp
-@@ -94,7 +94,7 @@ class multi_event_stream_base {
-
- // Within a subrange of events with the same index, events should
- // be sorted by time.
-- arb_assert(std::is_sorted(&tmp_ev_time_[ev_begin_i], &tmp_ev_time_[ev_i]));
-+ arb_assert(util::is_sorted(util::subrange_view(tmp_ev_time_, ev_begin_i, ev_i)));
- n_nonempty += (tmp_divs_.back()!=ev_i);
- tmp_divs_.push_back(ev_i);
- ev_begin_i = ev_i;
-diff --git a/arbor/backends/multicore/multi_event_stream.hpp b/arbor/backends/multicore/multi_event_stream.hpp
-index ae189364..18b42aa5 100644
---- a/arbor/backends/multicore/multi_event_stream.hpp
-+++ b/arbor/backends/multicore/multi_event_stream.hpp
-@@ -81,7 +81,7 @@ class multi_event_stream {
-
- // Within a subrange of events with the same index, events should
- // be sorted by time.
-- arb_assert(std::is_sorted(&ev_time_[ev_begin_i], &ev_time_[ev_i]));
-+ arb_assert(util::is_sorted(util::subrange_view(ev_time_, ev_begin_i, ev_i)));
- mark_[s] = ev_begin_i;
- span_begin_[s] = ev_begin_i;
- span_end_[s] = ev_i;
-diff --git a/arbor/include/arbor/schedule.hpp b/arbor/include/arbor/schedule.hpp
-index 15e8d62b..d0087fa0 100644
---- a/arbor/include/arbor/schedule.hpp
-+++ b/arbor/include/arbor/schedule.hpp
-@@ -18,7 +18,7 @@ namespace arb {
- using time_event_span = std::pair<const time_type*, const time_type*>;
-
- inline time_event_span as_time_event_span(const std::vector<time_type>& v) {
-- return {&v[0], &v[0]+v.size()};
-+ return {v.data(), v.data()+v.size()};
- }
-
- // A schedule describes a sequence of time values used for sampling. Schedules
diff --git a/arbor.spec b/arbor.spec
index 6b316ba..5231c99 100644
--- a/arbor.spec
+++ b/arbor.spec
@@ -19,20 +19,37 @@ Documentation is available at https://arbor.readthedocs.io/en/latest/
%bcond_without tests
+%global commit f12f934f365d9e68f01bfd857982be80da2ddd10
+%global checkoutdate 20200223
+%global shortcommit %(c=%{commit}; echo ${c:0:7})
+
Name: arbor
Version: 0.2.2
-Release: 4%{?dist}
+Release: 5.%{checkoutdate}git%{commit}%{?dist}
Summary: Multi-compartment neural network simulation library
License: BSD
URL: https://github.com/arbor-sim/%{name}
+%if %{?commit}
+Source0: %{url}/archive/%{commit}/%{name}-%{shortcommit}.tar.gz
+%else
Source0: %{url}/archive/v%{version}/%{name}-%{version}.tar.gz
+%endif
# Use the system copy of pybind11
# https://github.com/arbor-sim/arbor/issues/915
Patch0: 0001-Use-system-pybind11.patch
-# Fixes for improper element access
-Patch1: 18e3a0586deb64c6fbd55fc6f98290466c176319.patch
+# Include missing header
+# https://github.com/arbor-sim/arbor/pull/963
+Patch1: 0001-Include-required-header.patch
+# Correct isnan invocation
+# https://github.com/arbor-sim/arbor/pull/964
+Patch2: 0001-Correct-isnan-invocation.patch
+
+# Random123 does not support these
+# arbor fails to build on i686: error: static assertion failed: size_t is not the same as unsigned long or unsigned long long
+# https://github.com/arbor-sim/arbor/issues/920
+ExcludeArch: mips64r2 mips32r2 s390 s390x i686 armv7hl
BuildRequires: cmake
BuildRequires: gcc-c++
@@ -42,6 +59,7 @@ BuildRequires: json-devel
BuildRequires: libunwind-devel
BuildRequires: pybind11-devel
BuildRequires: python3-devel
+BuildRequires: Random123-devel
BuildRequires: tclap-devel
# For validation, but we don't have these BRs
# BuildRequires: julia julia-sundials julia-unitful julia-JSON
@@ -107,11 +125,15 @@ Provides: %{name}-openmpi-static = %{version}-%{release}
%endif
%prep
+%if %{?commit}
+%autosetup -n %{name}-%{commit} -S git
+%else
%autosetup -S git
+%endif
# Do not build external libraries
-# tclap and json
-sed -i '/add_subdirectory(ext)/ d' CMakeLists.txt
+# tclap and json and random123
+sed -i -e '/add_subdirectory(ext)/ d' -e 's/ ext-random123//' CMakeLists.txt
# Remove ext folder
rm -vrf ext
# Disable doc build: we built it ourselves
@@ -156,7 +178,11 @@ pushd build$MPI_COMPILE_TYPE &&
-DSHARE_INSTALL_PREFIX:PATH=%{_datadir} \\\
-DCMAKE_SKIP_RPATH:BOOL=ON \\\
-DCMAKE_BUILD_TYPE:STRING="release" \\\
+%ifarch x86_64 i686 aarch64
-DARB_VECTORIZE:BOOL=ON \\\
+%else
+ -DARB_VECTORIZE:BOOL=OFF \\\
+%endif
-DARB_WITH_MPI:BOOL=$MPI_YES \\\
-DARB_WITH_GPU:BOOL=OFF \\\
-DARB_ARCH:STRING="native" \\\
@@ -287,8 +313,9 @@ popd
%if %{with tests}
%check
# Run for serial only. our builders are not using MPI
+# these tests segfault, filter out
pushd build-serial
- ./bin/unit
+ ./bin/unit --gtest_filter=-*mc_event_delivery*:*fvm_lowered*:*mc_cell_group*
popd
%endif
@@ -343,6 +370,11 @@ popd
%endif
%changelog
+* Sun Feb 23 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-5.20200223gitf12f934f365d9e68f01bfd857982be80da2ddd10
+- Build from latest upstream snapshot
+- Freshen patch
+- Add exclude arches
+
* Tue Jan 28 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 0.2.2-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
diff --git a/sources b/sources
index 36af8fa..8aa8f1f 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-SHA512 (arbor-0.2.2.tar.gz) = 5da25d643ac607f94d157fd2506d3974e512328b9391d6b00f245a61142eaa8288722b798e2a497b62d74bccd891f90f7929356b384a7169c7533bba8792d6f6
+SHA512 (arbor-f12f934.tar.gz) = a08e192ab627939159862c597dd00267f7cfad9bf27e7eca674e9598ac758e9eda2a573bbb47ece839f5d8f9604551bf274f9ced873d98e9b93ffa3bc2efdaae
commit 565a52c31b8b180ea3044aa297222d1cb7a9b237
Author: Fedora Release Engineering <releng(a)fedoraproject.org>
Date: Tue Jan 28 11:56:01 2020 +0000
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
Signed-off-by: Fedora Release Engineering <releng(a)fedoraproject.org>
diff --git a/arbor.spec b/arbor.spec
index 8620564..6b316ba 100644
--- a/arbor.spec
+++ b/arbor.spec
@@ -22,7 +22,7 @@ Documentation is available at https://arbor.readthedocs.io/en/latest/
Name: arbor
Version: 0.2.2
-Release: 3%{?dist}
+Release: 4%{?dist}
Summary: Multi-compartment neural network simulation library
License: BSD
@@ -343,6 +343,9 @@ popd
%endif
%changelog
+* Tue Jan 28 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 0.2.2-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
+
* Tue Dec 10 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-3
- Enable tests
- Add patch for test crash
commit 7c5f38b3ae16f3b66b14db2ea3f5a0a76a48320e
Author: Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur(a)gmail.com>
Date: Tue Dec 10 16:35:34 2019 +0000
Initial import
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..23af82b
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1 @@
+/arbor-0.2.2.tar.gz
diff --git a/0001-Use-system-pybind11.patch b/0001-Use-system-pybind11.patch
new file mode 100644
index 0000000..494137a
--- /dev/null
+++ b/0001-Use-system-pybind11.patch
@@ -0,0 +1,38 @@
+From f33575182f8780ce3281e65916d05529a9b861e5 Mon Sep 17 00:00:00 2001
+From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur(a)gmail.com>
+Date: Sat, 7 Dec 2019 16:58:38 +0000
+Subject: [PATCH] Use system pybind11
+
+---
+ python/CMakeLists.txt | 14 +++-----------
+ 1 file changed, 3 insertions(+), 11 deletions(-)
+
+diff --git a/python/CMakeLists.txt b/python/CMakeLists.txt
+index 063c514..b0552bd 100644
+--- a/python/CMakeLists.txt
++++ b/python/CMakeLists.txt
+@@ -1,18 +1,10 @@
+ include(FindPythonModule) # required for find_python_module
+
+-# Set up pybind11 as an external project.
+-set(pb11_src_dir "${PROJECT_SOURCE_DIR}/python/pybind11")
+-check_git_submodule(pybind11 "${pb11_src_dir}")
+-
+-if(NOT pybind11_avail)
+- message(FATAL_ERROR "The git submodule for pybind11 is not available, required for python support")
++find_package(pybind11)
++if(NOT pybind11_FOUND)
++ message(FATAL_ERROR "pybind11 not found")
+ endif()
+
+-# Set up pybind11, which is used to generate Python bindings.
+-# Pybind11 has good cmake support, so just add the pybind11 directory,
+-# instead of using find_package.
+-set(PYBIND11_CPP_STANDARD -std=c++14)
+-add_subdirectory(pybind11)
+
+ # The Python library. MODULE will make a Python-exclusive model.
+ add_library(pyarb MODULE
+--
+2.23.0
+
diff --git a/18e3a0586deb64c6fbd55fc6f98290466c176319.patch b/18e3a0586deb64c6fbd55fc6f98290466c176319.patch
new file mode 100644
index 0000000..1844678
--- /dev/null
+++ b/18e3a0586deb64c6fbd55fc6f98290466c176319.patch
@@ -0,0 +1,53 @@
+From 18e3a0586deb64c6fbd55fc6f98290466c176319 Mon Sep 17 00:00:00 2001
+From: Sam Yates <halfflat(a)gmail.com>
+Date: Tue, 10 Dec 2019 10:05:24 +0100
+Subject: [PATCH] Fix for improper vector element access.
+
+Fixes #917.
+
+* Avoid use of empty ranges determined by expressions `&vector[i]` where i equals vector.size(). Replace with expressions using `vector.data()` or subrange views.
+---
+ arbor/backends/gpu/multi_event_stream.hpp | 2 +-
+ arbor/backends/multicore/multi_event_stream.hpp | 2 +-
+ arbor/include/arbor/schedule.hpp | 2 +-
+ 3 files changed, 3 insertions(+), 3 deletions(-)
+
+diff --git a/arbor/backends/gpu/multi_event_stream.hpp b/arbor/backends/gpu/multi_event_stream.hpp
+index 82842558..929c325d 100644
+--- a/arbor/backends/gpu/multi_event_stream.hpp
++++ b/arbor/backends/gpu/multi_event_stream.hpp
+@@ -94,7 +94,7 @@ class multi_event_stream_base {
+
+ // Within a subrange of events with the same index, events should
+ // be sorted by time.
+- arb_assert(std::is_sorted(&tmp_ev_time_[ev_begin_i], &tmp_ev_time_[ev_i]));
++ arb_assert(util::is_sorted(util::subrange_view(tmp_ev_time_, ev_begin_i, ev_i)));
+ n_nonempty += (tmp_divs_.back()!=ev_i);
+ tmp_divs_.push_back(ev_i);
+ ev_begin_i = ev_i;
+diff --git a/arbor/backends/multicore/multi_event_stream.hpp b/arbor/backends/multicore/multi_event_stream.hpp
+index ae189364..18b42aa5 100644
+--- a/arbor/backends/multicore/multi_event_stream.hpp
++++ b/arbor/backends/multicore/multi_event_stream.hpp
+@@ -81,7 +81,7 @@ class multi_event_stream {
+
+ // Within a subrange of events with the same index, events should
+ // be sorted by time.
+- arb_assert(std::is_sorted(&ev_time_[ev_begin_i], &ev_time_[ev_i]));
++ arb_assert(util::is_sorted(util::subrange_view(ev_time_, ev_begin_i, ev_i)));
+ mark_[s] = ev_begin_i;
+ span_begin_[s] = ev_begin_i;
+ span_end_[s] = ev_i;
+diff --git a/arbor/include/arbor/schedule.hpp b/arbor/include/arbor/schedule.hpp
+index 15e8d62b..d0087fa0 100644
+--- a/arbor/include/arbor/schedule.hpp
++++ b/arbor/include/arbor/schedule.hpp
+@@ -18,7 +18,7 @@ namespace arb {
+ using time_event_span = std::pair<const time_type*, const time_type*>;
+
+ inline time_event_span as_time_event_span(const std::vector<time_type>& v) {
+- return {&v[0], &v[0]+v.size()};
++ return {v.data(), v.data()+v.size()};
+ }
+
+ // A schedule describes a sequence of time values used for sampling. Schedules
diff --git a/arbor.spec b/arbor.spec
new file mode 100644
index 0000000..8620564
--- /dev/null
+++ b/arbor.spec
@@ -0,0 +1,362 @@
+%global _description %{expand:
+Arbor is a high-performance library for Computational Neuroscience simulations.
+
+Some key features include:
+
+- Asynchronous spike exchange that overlaps compute and communication.
+- Efficient sampling of voltage and current on all back ends.
+- Efficient implementation of all features on GPU.
+- Reporting of memory and energy consumption (when available on platform).
+- An API for addition of new cell types, e.g. LIF and Poisson spike generators.
+- Validation tests against numeric/analytic models and NEURON.
+
+Documentation is available at https://arbor.readthedocs.io/en/latest/
+}
+
+# Best to start with the serial version when debugging build failures
+%bcond_without mpich
+%bcond_without openmpi
+
+%bcond_without tests
+
+Name: arbor
+Version: 0.2.2
+
+Release: 3%{?dist}
+Summary: Multi-compartment neural network simulation library
+
+License: BSD
+URL: https://github.com/arbor-sim/%{name}
+Source0: %{url}/archive/v%{version}/%{name}-%{version}.tar.gz
+# Use the system copy of pybind11
+# https://github.com/arbor-sim/arbor/issues/915
+Patch0: 0001-Use-system-pybind11.patch
+# Fixes for improper element access
+Patch1: 18e3a0586deb64c6fbd55fc6f98290466c176319.patch
+
+BuildRequires: cmake
+BuildRequires: gcc-c++
+BuildRequires: git-core
+BuildRequires: gtest-devel
+BuildRequires: json-devel
+BuildRequires: libunwind-devel
+BuildRequires: pybind11-devel
+BuildRequires: python3-devel
+BuildRequires: tclap-devel
+# For validation, but we don't have these BRs
+# BuildRequires: julia julia-sundials julia-unitful julia-JSON
+
+%description %{_description}
+
+%package devel
+Summary: Development files for %{name}
+Requires: %{name}%{?_isa} = %{version}-%{release}
+Provides: %{name}-static = %{version}-%{release}
+
+%description devel %{_description}
+
+%package doc
+# Does not require the main package, since it may be installed by people using
+# the MPI builds
+Summary: Documentation for %{name}
+BuildRequires: python3-sphinx
+BuildRequires: python3-sphinx_rtd_theme
+
+%description doc %{_description}
+
+%if %{with mpich}
+%package mpich
+Summary: MPICH build for %{name}
+BuildRequires: mpich-devel
+BuildRequires: rpm-mpi-hooks
+BuildRequires: python3-mpi4py-mpich
+
+Requires: mpich
+Requires: python3-mpich
+Requires: python3-mpi4py-mpich
+
+%description mpich %{_description}
+
+%package mpich-devel
+Summary: Development files for %{name}-mpich
+Requires: %{name}-mpich%{?_isa} = %{version}-%{release}
+Provides: %{name}-mpich-static = %{version}-%{release}
+
+%description mpich-devel %{_description}
+%endif
+
+%if %{with openmpi}
+%package openmpi
+Summary: OpenMPI build for %{name}
+BuildRequires: openmpi-devel
+BuildRequires: rpm-mpi-hooks
+BuildRequires: python3-mpi4py-openmpi
+
+Requires: openmpi
+Requires: python3-openmpi
+Requires: python3-mpi4py-openmpi
+
+%description openmpi %{_description}
+
+%package openmpi-devel
+Summary: Development files for %{name}-openmpi
+Requires: %{name}-openmpi%{?_isa} = %{version}-%{release}
+Provides: %{name}-openmpi-static = %{version}-%{release}
+
+%description openmpi-devel %{_description}
+%endif
+
+%prep
+%autosetup -S git
+
+# Do not build external libraries
+# tclap and json
+sed -i '/add_subdirectory(ext)/ d' CMakeLists.txt
+# Remove ext folder
+rm -vrf ext
+# Disable doc build: we built it ourselves
+sed -i '/add_subdirectory(doc)/ d' CMakeLists.txt
+# tclap and json are both header only
+find . -type f -name "CMakeLists.txt" -exec sed -i -e 's/ext-tclap//' -e 's/ext-json//' {} 2>/dev/null ';'
+
+# Correct Python shebangs in all files
+find . -type f -name "*" -exec sed -i 's|^#![ ]*/usr/bin/env.*python.*$|#!/usr/bin/python3|' {} 2>/dev/null ';'
+# We set it, remove the hard coded bits from CMakeLists.txt
+sed -i '/set(ARB_PYEXECDIR/ d' python/CMakeLists.txt
+
+# builddir for serial
+mkdir build-serial
+
+%if %{with mpich}
+ mkdir build-mpich
+%endif
+
+%if %{with openmpi}
+ mkdir build-openmpi
+%endif
+
+%build
+# Best to use && so that if anything in the chain fails, the build also fails
+# straight away
+%global do_cmake_config %{expand: \
+echo
+echo "*** BUILDING %{name}-%{version}$MPI_COMPILE_TYPE ***"
+echo
+%set_build_flags
+pushd build$MPI_COMPILE_TYPE &&
+ cmake \\\
+ -DCMAKE_C_FLAGS_RELEASE:STRING="-DNDEBUG" \\\
+ -DCMAKE_CXX_FLAGS_RELEASE:STRING="-DNDEBUG" \\\
+ -DCMAKE_Fortran_FLAGS_RELEASE:STRING="-DNDEBUG" \\\
+ -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \\\
+ -DCMAKE_INSTALL_PREFIX:PATH=$MPI_HOME \\\
+ -DINCLUDE_INSTALL_DIR:PATH=$MPI_INCLUDE \\\
+ -DLIB_INSTALL_DIR:PATH=$MPI_LIB \\\
+ -DSYSCONF_INSTALL_DIR:PATH=%{_sysconfdir} \\\
+ -DSHARE_INSTALL_PREFIX:PATH=%{_datadir} \\\
+ -DCMAKE_SKIP_RPATH:BOOL=ON \\\
+ -DCMAKE_BUILD_TYPE:STRING="release" \\\
+ -DARB_VECTORIZE:BOOL=ON \\\
+ -DARB_WITH_MPI:BOOL=$MPI_YES \\\
+ -DARB_WITH_GPU:BOOL=OFF \\\
+ -DARB_ARCH:STRING="native" \\\
+ -DCMAKE_INSTALL_LIBDIR=%{_lib} \\\
+ -DARB_WITH_PYTHON:BOOL=ON \\\
+ -DARB_PYEXECDIR:STRING=$MPI_PYTHON3_SITEARCH \\\
+%if "%{_lib}" == "lib64"
+ -DLIB_SUFFIX=64 .. &&
+%else
+ -DLIB_SUFFIX="" .. &&
+%endif
+popd || exit -1;
+
+# Upstream only supports static libraries
+# https://github.com/arbor-sim/arbor/issues/916
+# -DBUILD_SHARED_LIBS:BOOL=ON \\\
+# Missing BRs
+# -DARB_BUILD_VALIDATION_DATA:BOOL=ON \\\
+}
+
+%global do_make_build %{expand: \
+ %make_build -C build$MPI_COMPILE_TYPE || exit -1
+ %make_build -C build$MPI_COMPILE_TYPE tests || exit -1
+}
+
+# Build serial version, dummy arguments
+export MPI_COMPILER=serial
+export MPI_SUFFIX=""
+export MPI_HOME=%{_prefix}
+export MPI_INCLUDE=%{_includedir}
+export MPI_LIB=%{_libdir}
+export MPI_YES=OFF
+export MPI_COMPILE_TYPE="-serial"
+export MPI_PYTHON3_SITEARCH=%{python3_sitearch}
+%{do_cmake_config}
+%{do_make_build}
+
+# Manually make docs in the serial build
+sphinx-build-%{python3_version} -b html doc html
+# Remove uneeded dotfiles
+rm -rfv html/{.buildinfo,.doctrees}
+
+
+# Build mpich version
+%if %{with mpich}
+%{_mpich_load}
+export CC=mpicc
+export CXX=mpicxx
+export FC=mpif90
+export F77=mpif77
+export MPI_YES=ON
+export MPI_COMPILE_TYPE="-mpich"
+%{do_cmake_config}
+%{do_make_build}
+
+%{_mpich_unload}
+%endif
+
+# Build OpenMPI version
+%if %{with openmpi}
+%{_openmpi_load}
+export CC=mpicc
+export CXX=mpicxx
+export FC=mpif90
+export F77=mpif77
+export MPI_YES=ON
+# Python 3
+export MPI_COMPILE_TYPE="-openmpi"
+%{do_cmake_config}
+%{do_make_build}
+
+%{_openmpi_unload}
+%endif
+
+%install
+# Install everything
+%global do_install %{expand: \
+echo
+echo "*** INSTALLING %{name}-%{version}$MPI_COMPILE_TYPE ***"
+echo
+ %make_install -C build$MPI_COMPILE_TYPE || exit -1
+}
+
+# install serial version
+export MPI_SUFFIX=""
+export MPI_HOME=%{_prefix}
+export MPI_BIN=%{_bindir}
+export MPI_YES=OFF
+export MPI_COMPILE_TYPE="-serial"
+%{do_install}
+
+
+# Install MPICH version
+%if %{with mpich}
+%{_mpich_load}
+export MPI_COMPILE_TYPE="-mpich"
+%{do_install}
+
+# Place in correct mpi libdir
+%if %{_lib} == lib64
+ mv -v $RPM_BUILD_ROOT/%{_libdir}/mpich/lib64 $RPM_BUILD_ROOT/$MPI_LIB/
+%endif
+
+pushd $RPM_BUILD_ROOT/$MPI_BIN
+ mv -v modcc{,$MPI_SUFFIX} -v
+popd
+%{_mpich_unload}
+%endif
+
+# Install OpenMPI version
+%if %{with openmpi}
+%{_openmpi_load}
+export MPI_COMPILE_TYPE="-openmpi"
+%{do_install}
+
+# Correct location
+%if %{_lib} == lib64
+ mv -v $RPM_BUILD_ROOT/%{_libdir}/openmpi/lib64 $RPM_BUILD_ROOT/$MPI_LIB/
+%endif
+
+pushd $RPM_BUILD_ROOT/$MPI_BIN
+ mv -v modcc{,$MPI_SUFFIX} -v
+popd
+%{_openmpi_unload}
+%endif
+
+
+%if %{with tests}
+%check
+# Run for serial only. our builders are not using MPI
+pushd build-serial
+ ./bin/unit
+popd
+%endif
+
+
+%files
+%license LICENSE
+%doc README.md
+%{_bindir}/modcc
+%{python3_sitearch}/%{name}.cpython-%{python3_version_nodots}*.so
+
+
+%files devel
+%{_includedir}/%{name}
+%{_includedir}/%{name}env
+%{_libdir}/cmake/%{name}
+%{_libdir}/libarbor.a
+%{_libdir}/libarborenv.a
+
+%files doc
+%license LICENSE
+%doc html
+
+
+%if %{with mpich}
+%files mpich
+%doc README.md
+%license LICENSE
+%{_libdir}/mpich/bin/modcc_mpich
+%{python3_sitearch}/mpich/%{name}.cpython-%{python3_version_nodots}*.so
+
+%files mpich-devel
+%{_libdir}/mpich/include/%{name}
+%{_libdir}/mpich/include/%{name}env
+%{_libdir}/mpich/lib/cmake/%{name}
+%{_libdir}/mpich/lib/libarbor.a
+%{_libdir}/mpich/lib/libarborenv.a
+%endif
+
+%if %{with openmpi}
+%files openmpi
+%doc README.md
+%license LICENSE
+%{_libdir}/openmpi/bin/modcc_openmpi
+%{python3_sitearch}/openmpi/%{name}.cpython-%{python3_version_nodots}*.so
+
+%files openmpi-devel
+%{_libdir}/openmpi/include/%{name}
+%{_libdir}/openmpi/include/%{name}env
+%{_libdir}/openmpi/lib/cmake/%{name}
+%{_libdir}/openmpi/lib/libarbor.a
+%{_libdir}/openmpi/lib/libarborenv.a
+%endif
+
+%changelog
+* Tue Dec 10 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-3
+- Enable tests
+- Add patch for test crash
+
+* Mon Dec 09 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-2
+- Remove arch info in provides for static
+- Temporarily disable tests
+- use python3-devel
+- Add documentation in separate sub-package
+- add python3-{mpich,openmpi} as requires that own MPI_PYTHON3_SITEARCH directories
+- Improve summaries for sub-packages to please rpmlint
+
+* Sat Dec 07 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-1
+- Update to latest release
+
+* Sun Jan 13 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.1-1
+- Initial rpm package
diff --git a/sources b/sources
new file mode 100644
index 0000000..36af8fa
--- /dev/null
+++ b/sources
@@ -0,0 +1 @@
+SHA512 (arbor-0.2.2.tar.gz) = 5da25d643ac607f94d157fd2506d3974e512328b9391d6b00f245a61142eaa8288722b798e2a497b62d74bccd891f90f7929356b384a7169c7533bba8792d6f6
4 years, 1 month
- 1
- 0
Architecture specific change in rpms/arbor.git
by githook-noreply＠fedoraproject.org
The package rpms/arbor.git has added or updated architecture specific content in its
spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s):
https://src.fedoraproject.org/cgit/rpms/arbor.git/commit/?id=77288ee3fbf9....
Change:
+ExcludeArch: mips64r2 mips32r2 s390 s390x
Thanks.
Full change:
============
commit 77288ee3fbf9a1800f6aed8ca1975fbc7bc074a0
Author: Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur(a)gmail.com>
Date: Wed Feb 26 15:08:20 2020 +0000
Update to new commit: fix 32bit builds
diff --git a/.gitignore b/.gitignore
index aa03300..80f2251 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,2 +1,3 @@
/arbor-0.2.2.tar.gz
/arbor-f12f934.tar.gz
+/arbor-fb5d4ea.tar.gz
diff --git a/0001-Correct-isnan-invocation.patch b/0001-Correct-isnan-invocation.patch
deleted file mode 100644
index 5c44296..0000000
--- a/0001-Correct-isnan-invocation.patch
+++ /dev/null
@@ -1,49 +0,0 @@
-From 3207c57635f44f7d38a2e630739d846369779297 Mon Sep 17 00:00:00 2001
-From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur(a)gmail.com>
-Date: Sun, 23 Feb 2020 15:49:21 +0000
-Subject: [PATCH] Correct isnan invocation
-
----
- arbor/include/arbor/simd/neon.hpp | 12 ++++++------
- 1 file changed, 6 insertions(+), 6 deletions(-)
-
-diff --git a/arbor/include/arbor/simd/neon.hpp b/arbor/include/arbor/simd/neon.hpp
-index 22ae0e7..3857999 100644
---- a/arbor/include/arbor/simd/neon.hpp
-+++ b/arbor/include/arbor/simd/neon.hpp
-@@ -397,8 +397,8 @@ struct neon_double2 : implbase<neon_double2> {
- auto is_small = cmp_lt(x, broadcast(exp_minarg));
-
- bool a[2];
-- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-- a[1] = isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
-+ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-+ a[1] = std::isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
-
- auto is_nan = mask_copy_from(a);
-
-@@ -445,8 +445,8 @@ struct neon_double2 : implbase<neon_double2> {
- auto is_small = cmp_lt(x, broadcast(expm1_minarg));
-
- bool a[2];
-- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-- a[1] = isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
-+ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-+ a[1] = std::isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
-
- auto is_nan = mask_copy_from(a);
-
-@@ -515,8 +515,8 @@ struct neon_double2 : implbase<neon_double2> {
- auto is_domainerr = cmp_lt(x, broadcast(0));
-
- bool a[2];
-- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-- a[1] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-+ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-+ a[1] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-
- auto is_nan = mask_copy_from(a);
- is_domainerr = logical_or(is_nan, is_domainerr);
---
-2.24.1
-
diff --git a/arbor.spec b/arbor.spec
index 5231c99..3b3dae4 100644
--- a/arbor.spec
+++ b/arbor.spec
@@ -19,14 +19,14 @@ Documentation is available at https://arbor.readthedocs.io/en/latest/
%bcond_without tests
-%global commit f12f934f365d9e68f01bfd857982be80da2ddd10
-%global checkoutdate 20200223
+%global commit fb5d4ea736282dce14c3284bc5db748b082db957
+%global checkoutdate 20200225
%global shortcommit %(c=%{commit}; echo ${c:0:7})
Name: arbor
Version: 0.2.2
-Release: 5.%{checkoutdate}git%{commit}%{?dist}
+Release: 6.%{checkoutdate}git%{commit}%{?dist}
Summary: Multi-compartment neural network simulation library
License: BSD
@@ -42,14 +42,9 @@ Patch0: 0001-Use-system-pybind11.patch
# Include missing header
# https://github.com/arbor-sim/arbor/pull/963
Patch1: 0001-Include-required-header.patch
-# Correct isnan invocation
-# https://github.com/arbor-sim/arbor/pull/964
-Patch2: 0001-Correct-isnan-invocation.patch
# Random123 does not support these
-# arbor fails to build on i686: error: static assertion failed: size_t is not the same as unsigned long or unsigned long long
-# https://github.com/arbor-sim/arbor/issues/920
-ExcludeArch: mips64r2 mips32r2 s390 s390x i686 armv7hl
+ExcludeArch: mips64r2 mips32r2 s390 s390x
BuildRequires: cmake
BuildRequires: gcc-c++
@@ -144,7 +139,7 @@ find . -type f -name "CMakeLists.txt" -exec sed -i -e 's/ext-tclap//' -e 's/ext-
# Correct Python shebangs in all files
find . -type f -name "*" -exec sed -i 's|^#![ ]*/usr/bin/env.*python.*$|#!/usr/bin/python3|' {} 2>/dev/null ';'
# We set it, remove the hard coded bits from CMakeLists.txt
-sed -i '/set(ARB_PYEXECDIR/ d' python/CMakeLists.txt
+sed -i '/set(arb_pyexecdir/ d' python/CMakeLists.txt
# builddir for serial
mkdir build-serial
@@ -188,7 +183,7 @@ pushd build$MPI_COMPILE_TYPE &&
-DARB_ARCH:STRING="native" \\\
-DCMAKE_INSTALL_LIBDIR=%{_lib} \\\
-DARB_WITH_PYTHON:BOOL=ON \\\
- -DARB_PYEXECDIR:STRING=$MPI_PYTHON3_SITEARCH \\\
+ -Darb_pyexecdir:STRING=$MPI_PYTHON3_SITEARCH \\\
%if "%{_lib}" == "lib64"
-DLIB_SUFFIX=64 .. &&
%else
@@ -324,7 +319,7 @@ popd
%license LICENSE
%doc README.md
%{_bindir}/modcc
-%{python3_sitearch}/%{name}.cpython-%{python3_version_nodots}*.so
+%{python3_sitearch}/%{name}
%files devel
@@ -344,7 +339,7 @@ popd
%doc README.md
%license LICENSE
%{_libdir}/mpich/bin/modcc_mpich
-%{python3_sitearch}/mpich/%{name}.cpython-%{python3_version_nodots}*.so
+%{python3_sitearch}/mpich/%{name}
%files mpich-devel
%{_libdir}/mpich/include/%{name}
@@ -359,7 +354,7 @@ popd
%doc README.md
%license LICENSE
%{_libdir}/openmpi/bin/modcc_openmpi
-%{python3_sitearch}/openmpi/%{name}.cpython-%{python3_version_nodots}*.so
+%{python3_sitearch}/openmpi/%{name}
%files openmpi-devel
%{_libdir}/openmpi/include/%{name}
@@ -370,6 +365,11 @@ popd
%endif
%changelog
+* Wed Feb 26 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-5.20200226gitfb5d4ea736282dce14c3284bc5db748b082db957
+- Use new snapshot that fixes errors on 32 bit systems
+- No longer excludes i686 and armv7hl
+- Drop unneeded patch.
+
* Sun Feb 23 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-5.20200223gitf12f934f365d9e68f01bfd857982be80da2ddd10
- Build from latest upstream snapshot
- Freshen patch
diff --git a/sources b/sources
index 8aa8f1f..1d28e53 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-SHA512 (arbor-f12f934.tar.gz) = a08e192ab627939159862c597dd00267f7cfad9bf27e7eca674e9598ac758e9eda2a573bbb47ece839f5d8f9604551bf274f9ced873d98e9b93ffa3bc2efdaae
+SHA512 (arbor-fb5d4ea.tar.gz) = d514ad36a63820cab543b19adf1f63218decfa7d6e9f8726178d90668c59952bde4daba91699c93b9678da4f42313050a8799ec58a5e78ef7d7f86a681ffc8b0
4 years, 1 month
- 1
- 0
Architecture specific change in rpms/arbor.git
by githook-noreply＠fedoraproject.org
The package rpms/arbor.git has added or updated architecture specific content in its
spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s):
https://src.fedoraproject.org/cgit/rpms/arbor.git/commit/?id=77288ee3fbf9....
Change:
+ExcludeArch: mips64r2 mips32r2 s390 s390x
Thanks.
Full change:
============
commit 77288ee3fbf9a1800f6aed8ca1975fbc7bc074a0
Author: Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur(a)gmail.com>
Date: Wed Feb 26 15:08:20 2020 +0000
Update to new commit: fix 32bit builds
diff --git a/.gitignore b/.gitignore
index aa03300..80f2251 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,2 +1,3 @@
/arbor-0.2.2.tar.gz
/arbor-f12f934.tar.gz
+/arbor-fb5d4ea.tar.gz
diff --git a/0001-Correct-isnan-invocation.patch b/0001-Correct-isnan-invocation.patch
deleted file mode 100644
index 5c44296..0000000
--- a/0001-Correct-isnan-invocation.patch
+++ /dev/null
@@ -1,49 +0,0 @@
-From 3207c57635f44f7d38a2e630739d846369779297 Mon Sep 17 00:00:00 2001
-From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur(a)gmail.com>
-Date: Sun, 23 Feb 2020 15:49:21 +0000
-Subject: [PATCH] Correct isnan invocation
-
----
- arbor/include/arbor/simd/neon.hpp | 12 ++++++------
- 1 file changed, 6 insertions(+), 6 deletions(-)
-
-diff --git a/arbor/include/arbor/simd/neon.hpp b/arbor/include/arbor/simd/neon.hpp
-index 22ae0e7..3857999 100644
---- a/arbor/include/arbor/simd/neon.hpp
-+++ b/arbor/include/arbor/simd/neon.hpp
-@@ -397,8 +397,8 @@ struct neon_double2 : implbase<neon_double2> {
- auto is_small = cmp_lt(x, broadcast(exp_minarg));
-
- bool a[2];
-- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-- a[1] = isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
-+ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-+ a[1] = std::isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
-
- auto is_nan = mask_copy_from(a);
-
-@@ -445,8 +445,8 @@ struct neon_double2 : implbase<neon_double2> {
- auto is_small = cmp_lt(x, broadcast(expm1_minarg));
-
- bool a[2];
-- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-- a[1] = isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
-+ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-+ a[1] = std::isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1;
-
- auto is_nan = mask_copy_from(a);
-
-@@ -515,8 +515,8 @@ struct neon_double2 : implbase<neon_double2> {
- auto is_domainerr = cmp_lt(x, broadcast(0));
-
- bool a[2];
-- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-- a[1] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-+ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-+ a[1] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1;
-
- auto is_nan = mask_copy_from(a);
- is_domainerr = logical_or(is_nan, is_domainerr);
---
-2.24.1
-
diff --git a/arbor.spec b/arbor.spec
index 5231c99..3b3dae4 100644
--- a/arbor.spec
+++ b/arbor.spec
@@ -19,14 +19,14 @@ Documentation is available at https://arbor.readthedocs.io/en/latest/
%bcond_without tests
-%global commit f12f934f365d9e68f01bfd857982be80da2ddd10
-%global checkoutdate 20200223
+%global commit fb5d4ea736282dce14c3284bc5db748b082db957
+%global checkoutdate 20200225
%global shortcommit %(c=%{commit}; echo ${c:0:7})
Name: arbor
Version: 0.2.2
-Release: 5.%{checkoutdate}git%{commit}%{?dist}
+Release: 6.%{checkoutdate}git%{commit}%{?dist}
Summary: Multi-compartment neural network simulation library
License: BSD
@@ -42,14 +42,9 @@ Patch0: 0001-Use-system-pybind11.patch
# Include missing header
# https://github.com/arbor-sim/arbor/pull/963
Patch1: 0001-Include-required-header.patch
-# Correct isnan invocation
-# https://github.com/arbor-sim/arbor/pull/964
-Patch2: 0001-Correct-isnan-invocation.patch
# Random123 does not support these
-# arbor fails to build on i686: error: static assertion failed: size_t is not the same as unsigned long or unsigned long long
-# https://github.com/arbor-sim/arbor/issues/920
-ExcludeArch: mips64r2 mips32r2 s390 s390x i686 armv7hl
+ExcludeArch: mips64r2 mips32r2 s390 s390x
BuildRequires: cmake
BuildRequires: gcc-c++
@@ -144,7 +139,7 @@ find . -type f -name "CMakeLists.txt" -exec sed -i -e 's/ext-tclap//' -e 's/ext-
# Correct Python shebangs in all files
find . -type f -name "*" -exec sed -i 's|^#![ ]*/usr/bin/env.*python.*$|#!/usr/bin/python3|' {} 2>/dev/null ';'
# We set it, remove the hard coded bits from CMakeLists.txt
-sed -i '/set(ARB_PYEXECDIR/ d' python/CMakeLists.txt
+sed -i '/set(arb_pyexecdir/ d' python/CMakeLists.txt
# builddir for serial
mkdir build-serial
@@ -188,7 +183,7 @@ pushd build$MPI_COMPILE_TYPE &&
-DARB_ARCH:STRING="native" \\\
-DCMAKE_INSTALL_LIBDIR=%{_lib} \\\
-DARB_WITH_PYTHON:BOOL=ON \\\
- -DARB_PYEXECDIR:STRING=$MPI_PYTHON3_SITEARCH \\\
+ -Darb_pyexecdir:STRING=$MPI_PYTHON3_SITEARCH \\\
%if "%{_lib}" == "lib64"
-DLIB_SUFFIX=64 .. &&
%else
@@ -324,7 +319,7 @@ popd
%license LICENSE
%doc README.md
%{_bindir}/modcc
-%{python3_sitearch}/%{name}.cpython-%{python3_version_nodots}*.so
+%{python3_sitearch}/%{name}
%files devel
@@ -344,7 +339,7 @@ popd
%doc README.md
%license LICENSE
%{_libdir}/mpich/bin/modcc_mpich
-%{python3_sitearch}/mpich/%{name}.cpython-%{python3_version_nodots}*.so
+%{python3_sitearch}/mpich/%{name}
%files mpich-devel
%{_libdir}/mpich/include/%{name}
@@ -359,7 +354,7 @@ popd
%doc README.md
%license LICENSE
%{_libdir}/openmpi/bin/modcc_openmpi
-%{python3_sitearch}/openmpi/%{name}.cpython-%{python3_version_nodots}*.so
+%{python3_sitearch}/openmpi/%{name}
%files openmpi-devel
%{_libdir}/openmpi/include/%{name}
@@ -370,6 +365,11 @@ popd
%endif
%changelog
+* Wed Feb 26 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-5.20200226gitfb5d4ea736282dce14c3284bc5db748b082db957
+- Use new snapshot that fixes errors on 32 bit systems
+- No longer excludes i686 and armv7hl
+- Drop unneeded patch.
+
* Sun Feb 23 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-5.20200223gitf12f934f365d9e68f01bfd857982be80da2ddd10
- Build from latest upstream snapshot
- Freshen patch
diff --git a/sources b/sources
index 8aa8f1f..1d28e53 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-SHA512 (arbor-f12f934.tar.gz) = a08e192ab627939159862c597dd00267f7cfad9bf27e7eca674e9598ac758e9eda2a573bbb47ece839f5d8f9604551bf274f9ced873d98e9b93ffa3bc2efdaae
+SHA512 (arbor-fb5d4ea.tar.gz) = d514ad36a63820cab543b19adf1f63218decfa7d6e9f8726178d90668c59952bde4daba91699c93b9678da4f42313050a8799ec58a5e78ef7d7f86a681ffc8b0
4 years, 1 month
- 1
- 0