November 2011 - epel-package-announce

Fedora EPEL 5 Update: nawk-20110810-2.el5

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2011-4982 2011-11-15 21:17:22 -------------------------------------------------------------------------------- Name : nawk Product : Fedora EPEL 5 Version : 20110810 Release : 2.el5 URL : http://www.cs.princeton.edu/~bwk/btl.mirror/index.html Summary : "The one true awk" descended from UNIX V7 Description : This is the version of awk described in "The AWK Programming Language", by Al Aho, Brian Kernighan, and Peter Weinberger. (Addison-Wesley, 1988, ISBN 0-201-07981-X). -------------------------------------------------------------------------------- Update Information: take out the smp tag in the make -------------------------------------------------------------------------------- References: [ 1 ] Bug #750299 - Segmentation fault (core dumped) when running nawk https://bugzilla.redhat.com/show_bug.cgi?id=750299 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update nawk' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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[SECURITY] Fedora EPEL 5 Update: ReviewBoard-1.5.7-1.el5

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2011-4986 2011-11-15 21:17:46 -------------------------------------------------------------------------------- Name : ReviewBoard Product : Fedora EPEL 5 Version : 1.5.7 Release : 1.el5 URL : http://www.review-board.org Summary : Web-based code review tool Description : Review Board is a powerful web-based code review tool that offers developers an easy way to handle code reviews. It scales well from small projects to large companies and offers a variety of tools to take much of the stress and time out of the code review process. -------------------------------------------------------------------------------- Update Information: - New upstream security release 1.5.7 - Security Fixes: - A script injection vulnerability was discovered in the commenting system. This affected the diff viewer and screenshot pages, and allowed a commenter to break the page and execute JavaScript -------------------------------------------------------------------------------- References: [ 1 ] Bug #754130 - CVE-2011-4312 ReviewBoard: XSS in the commenting system (diff viewer and screenshot pages) [fedora-all] https://bugzilla.redhat.com/show_bug.cgi?id=754130 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update ReviewBoard' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora EPEL 4 Update: R-2.14.0-3.el4

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2011-4996 2011-11-15 21:18:10 -------------------------------------------------------------------------------- Name : R Product : Fedora EPEL 4 Version : 2.14.0 Release : 3.el4 URL : http://www.r-project.org Summary : A language for data analysis and graphics Description : This is a metapackage that provides both core R userspace and all R development components. R is a language and environment for statistical computing and graphics. R is similar to the award-winning S system, which was developed at Bell Laboratories by John Chambers et al. It provides a wide variety of statistical and graphical techniques (linear and nonlinear modelling, statistical tests, time series analysis, classification, clustering, ...). R is designed as a true computer language with control-flow constructions for iteration and alternation, and it allows users to add additional functionality by defining new functions. For computationally intensive tasks, C, C++ and Fortran code can be linked and called at run time. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R packages. -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update R' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora EPEL 4 Update: R-DBI-0.2.5-3.el4

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2011-4996 2011-11-15 21:18:10 -------------------------------------------------------------------------------- Name : R-DBI Product : Fedora EPEL 4 Version : 0.2.5 Release : 3.el4 URL : http://cran.r-project.org/web/packages/DBI/index.html Summary : Database interface module for R Description : A database interface (DBI) definition for communication between R and relational database management systems. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R packages. -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update R-DBI' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora EPEL 4 Update: R-lmtest-0.9.29-1.el4

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2011-4996 2011-11-15 21:18:10 -------------------------------------------------------------------------------- Name : R-lmtest Product : Fedora EPEL 4 Version : 0.9.29 Release : 1.el4 URL : http://cran.r-project.org/web/packages/lmtest/index.html Summary : Testing Linear Regression Models for R Description : A collection of tests, data sets and examples for diagnostic checking in linear regression models in R. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R packages. -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update R-lmtest' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora EPEL 4 Update: R-nws-1.7.0.1-3.el4

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2011-4996 2011-11-15 21:18:10 -------------------------------------------------------------------------------- Name : R-nws Product : Fedora EPEL 4 Version : 1.7.0.1 Release : 3.el4 URL : http://cran.r-project.org/web/packages/nws/index.html Summary : R functions for NetWorkSpaces and Sleigh Description : Provides coordination and parallel execution facilities, as well as limited cross-language data exchange, using the netWorkSpaces server developed by REvolution Computing. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R packages. -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update R-nws' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora EPEL 4 Update: R-zoo-1.7.6-2.el4

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2011-4996 2011-11-15 21:18:10 -------------------------------------------------------------------------------- Name : R-zoo Product : Fedora EPEL 4 Version : 1.7.6 Release : 2.el4 URL : http://cran.r-project.org/web/packages/zoo/index.html Summary : Z's ordered observations for irregular time series Description : An S3 class with methods for totally ordered indexed observations. It is particularly aimed at irregular time series of numeric vectors/matrices and factors. zoo's key design goals are independence of a particular index/date/ time class and consistency with with ts and base R by providing methods to extend standard generics. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R packages. -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update R-zoo' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora EPEL 4 Update: R-qtl-1.21.2-2.el4

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2011-4996 2011-11-15 21:18:10 -------------------------------------------------------------------------------- Name : R-qtl Product : Fedora EPEL 4 Version : 1.21.2 Release : 2.el4 URL : http://www.rqtl.org/ Summary : Tools for analyzing QTL experiments Description : R-qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental crosses. Our goal is to make complex QTL mapping methods widely accessible and allow users to focus on modeling rather than computing. A key component of computational methods for QTL mapping is the hidden Markov model (HMM) technology for dealing with missing genotype data. We have implemented the main HMM algorithms, with allowance for the presence of genotyping errors, for backcrosses, intercrosses, and phase-known four-way crosses. The current version of R-qtl includes facilities for estimating genetic maps, identifying genotyping errors, and performing single-QTL genome scans and two-QTL, two-dimensional genome scans, by interval mapping (with the EM algorithm), Haley-Knott regression, and multiple imputation. All of this may be done in the presence of covariates (such as sex, age or treatment). One may also fit higher-order QTL models by multiple imputation and Haley-Knott regression. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R packages. -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update R-qtl' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora EPEL 6 Update: python-atfork-0.1.2-1.el6

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2011-5054 2011-11-22 20:49:31 -------------------------------------------------------------------------------- Name : python-atfork Product : Fedora EPEL 6 Version : 0.1.2 Release : 1.el6 URL : https://code.google.com/p/python-atfork Summary : Provides an API to register callbacks when forking Description : Atfork provides a pthread_atfork() work-a-like API for Python 2.4, 2.5 and 2.6 along with fixers to monkey patch standard library modules at run time to be safe in programs using both threading and forking. While mixing threads and forking in a program is generally considered to be a bad idea it need not be so painful. A missing API in the Python is an atfork mechanism so that locks can be acquired and released properly around fork calls. This module adds that. It also provides monkey patchers that fix the standard library to properly register callbacks for locks they create. -------------------------------------------------------------------------------- Update Information: Atfork provides a pthread_atfork() work-a-like API for Python 2.4, 2.5 and 2.6 along with fixers to monkey patch standard library modules at run time to be safe in programs using both threading and forking. -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update python-atfork' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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Fedora EPEL 6 Update: R-2.14.0-3.el6

by updates＠fedoraproject.org

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2011-4983 2011-11-15 21:17:24 -------------------------------------------------------------------------------- Name : R Product : Fedora EPEL 6 Version : 2.14.0 Release : 3.el6 URL : http://www.r-project.org Summary : A language for data analysis and graphics Description : This is a metapackage that provides both core R userspace and all R development components. R is a language and environment for statistical computing and graphics. R is similar to the award-winning S system, which was developed at Bell Laboratories by John Chambers et al. It provides a wide variety of statistical and graphical techniques (linear and nonlinear modelling, statistical tests, time series analysis, classification, clustering, ...). R is designed as a true computer language with control-flow constructions for iteration and alternation, and it allows users to add additional functionality by defining new functions. For computationally intensive tasks, C, C++ and Fortran code can be linked and called at run time. -------------------------------------------------------------------------------- Update Information: Update R to 2.14.0. This required a mass rebuild of R packages. -------------------------------------------------------------------------------- References: [ 1 ] Bug #751003 - New version of R 2.14.0 is available https://bugzilla.redhat.com/show_bug.cgi?id=751003 -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update R' at the command line. For more information, refer to "Managing Software with yum", available at http://docs.fedoraproject.org/yum/. All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------

12 years, 4 months

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epel-package-announce November 2011