Fedora EPEL 6 Update: gnudos-1.8-4.el6
by updates＠fedoraproject.org
--------------------------------------------------------------------------------
Fedora EPEL Update Notification
FEDORA-EPEL-2015-5f297f80d2
2015-11-29 18:53:41.193850
--------------------------------------------------------------------------------
Name : gnudos
Product : Fedora EPEL 6
Version : 1.8
Release : 4.el6
URL : http://sites.google.com/site/mohammedisam2000/home/projects
Summary : The GnuDOS library for GNU/Linux
Description :
GnuDOS is a library of functions for use under the GNU/Linux console/xterm.
It provides four core utilities and three service programs. The core utilities
are Kbd (for keyboard handling), Screen (for screen handling), Dialogs (for
drawing dialog and input boxes), and Strings (for string manipulation
functions). The service programs are: prime (a file manager), mino (a text
editor), and fog (a console form designer).
GnuDOS is a group of utilities that were designed to introduce new users to
the GNU system. The tools included in the library have a look-and-feel
familiar to users of MS-DOS like systems. The aim is to provide users
accustomed to such systems a gentle way to learn how to use the GNU
operating system.
--------------------------------------------------------------------------------
Update Information:
More bug fixes!
--------------------------------------------------------------------------------
This update can be installed with the "yum" update programs. Use
su -c 'yum update gnudos' at the command line.
For more information, refer to "Managing Software with yum",
available at https://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora EPEL GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
8 years, 4 months
[SECURITY] Fedora EPEL 6 Update: ProDy-1.7.1-1.el6
by updates＠fedoraproject.org
--------------------------------------------------------------------------------
Fedora EPEL Update Notification
FEDORA-EPEL-2015-8161a5151b
2015-11-29 18:53:41.193761
--------------------------------------------------------------------------------
Name : ProDy
Product : Fedora EPEL 6
Version : 1.7.1
Release : 1.el6
URL : http://www.csb.pitt.edu/ProDy
Summary : Application for protein structure, dynamics and sequence analysis
Description :
ProDy is a free and open-source Python package for protein structure, dynamics,
and sequence analysis. It allows for comparative analysis and modeling of
protein structural dynamics and sequence co-evolution. Fast and flexible ProDy
API is for interactive usage as well as application development. ProDy also
comes with several analysis applications and a graphical user interface for
visual analysis.
- Visit http://www.csb.pitt.edu/ProDy/ -
--------------------------------------------------------------------------------
Update Information:
ProDy-1.7.1-1.el6 - Update to 1.7.1 - Added scipy as BR package - Set CFLAGS
for hardened builds ProDy-1.7.1-1.fc22 - Update to 1.7.1 - Added scipy as BR
package - Set CFLAGS for hardened builds ProDy-1.7.1-1.fc21 - Update to 1.7.1
- Added scipy as BR package - Set CFLAGS for hardened builds
ProDy-1.7.1-1.fc23 - Update to 1.7.1 - Added scipy as BR package - Set CFLAGS
for hardened builds
--------------------------------------------------------------------------------
This update can be installed with the "yum" update programs. Use
su -c 'yum update ProDy' at the command line.
For more information, refer to "Managing Software with yum",
available at https://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora EPEL GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
8 years, 4 months
Fedora EPEL 6 Update: percolator-2.10.1-6.el6
by updates＠fedoraproject.org
--------------------------------------------------------------------------------
Fedora EPEL Update Notification
FEDORA-EPEL-2015-61a95f4954
2015-11-29 18:53:41.193029
--------------------------------------------------------------------------------
Name : percolator
Product : Fedora EPEL 6
Version : 2.10.1
Release : 6.el6
URL : http://per-colator.com/
Summary : Software for postprocessing of shotgun proteomics data
Description :
The first step in analyzing an mass spectrometry assay is to match
the harvested spectra against a target database
using database search engines such as Sequest and Mascot,
a process that renders list of peptide-spectrum matches.
However, it is not trivial to assess the accuracy
of these identifications.
Percolator uses a semi-supervised machine learning to
discriminate correct from incorrect peptide-spectrum matches,
and calculates accurate statistics such as q-value (FDR)
and posterior error probabilities.
--------------------------------------------------------------------------------
Update Information:
percolator-2.10.1-6.fc23 - Fixed conditional OS macros for EPEL - Set
compiler/linker flags for hardened builds - Packaging ugrade for EPEL
percolator-2.10.1-6.el6 - Fixed conditional OS macros for EPEL - Set
compiler/linker flags for hardened builds - Packaging ugrade for EPEL
percolator-2.10.1-6.el7 - Fixed conditional OS macros for EPEL - Set
compiler/linker flags for hardened builds - Packaging ugrade for EPEL
--------------------------------------------------------------------------------
This update can be installed with the "yum" update programs. Use
su -c 'yum update percolator' at the command line.
For more information, refer to "Managing Software with yum",
available at https://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora EPEL GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
8 years, 4 months
Fedora EPEL 7 Update: php-pear-DB-DataObject-1.11.5-1.el7
by updates＠fedoraproject.org
--------------------------------------------------------------------------------
Fedora EPEL Update Notification
FEDORA-EPEL-2015-583d48833e
2015-11-29 18:53:49.838694
--------------------------------------------------------------------------------
Name : php-pear-DB-DataObject
Product : Fedora EPEL 7
Version : 1.11.5
Release : 1.el7
URL : http://pear.php.net/package/DB_DataObject
Summary : An SQL Builder, Object Interface to Database Tables
Description :
DataObject performs 2 tasks:
1. Builds SQL statements based on the objects vars and the builder methods.
2. acts as a datastore for a table row.
The core class is designed to be extended for each of your tables so that you
put the data logic inside the data classes. Included is a Generator to make
your configuration files and your base classes.
--------------------------------------------------------------------------------
Update Information:
**Version 1.11.5** Minor feature and fix release. Changes * force usage of
tableName - rather than direct access to __table * autoJoin: check joined tables
against database structure Bugs * pear#20536 - generator spaces after
dataobject variables Feature requests * pear#20540 - support empty
extends_location so that no require_once is generated by Generator
--------------------------------------------------------------------------------
This update can be installed with the "yum" update programs. Use
su -c 'yum update php-pear-DB-DataObject' at the command line.
For more information, refer to "Managing Software with yum",
available at https://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora EPEL GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
8 years, 4 months
Fedora EPEL 7 Update: atari++-1.80-1.el7
by updates＠fedoraproject.org
--------------------------------------------------------------------------------
Fedora EPEL Update Notification
FEDORA-EPEL-2015-4c2e1c3377
2015-11-29 18:53:49.838653
--------------------------------------------------------------------------------
Name : atari++
Product : Fedora EPEL 7
Version : 1.80
Release : 1.el7
URL : http://www.xl-project.com/
Summary : Unix based emulator of the Atari eight bit computers
Description :
The Atari++ Emulator is a Unix based emulator of the Atari eight bit
computers, namely the Atari 400 and 800, the Atari 400XL, 800XL and 130XE,
and the Atari 5200 game console. The emulator is auto-configurable and
will compile on a variety of systems (Linux, Solaris, Irix).
Atari++ 1.30 and up contain a built-in ROM emulation that tries to mimic
the AtariXL operating system closely.
--------------------------------------------------------------------------------
Update Information:
- updated to version 1.80 - http://www.xl-project.com/news.html
--------------------------------------------------------------------------------
References:
[ 1 ] Bug #1279847 - atari++-1.80 is available
https://bugzilla.redhat.com/show_bug.cgi?id=1279847
--------------------------------------------------------------------------------
This update can be installed with the "yum" update programs. Use
su -c 'yum update atari++' at the command line.
For more information, refer to "Managing Software with yum",
available at https://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora EPEL GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
8 years, 4 months
[SECURITY] Fedora EPEL 7 Update: sundials-2.6.2-11.el7
by updates＠fedoraproject.org
--------------------------------------------------------------------------------
Fedora EPEL Update Notification
FEDORA-EPEL-2015-c399ccf199
2015-11-29 18:53:49.838555
--------------------------------------------------------------------------------
Name : sundials
Product : Fedora EPEL 7
Version : 2.6.2
Release : 11.el7
URL : http://www.llnl.gov/casc/sundials/
Summary : Suite of nonlinear solvers
Description :
SUNDIALS is a SUite of Non-linear DIfferential/ALgebraic equation Solvers
for use in writing mathematical software.
SUNDIALS was implemented with the goal of providing robust time integrators
and nonlinear solvers that can easily be incorporated into existing simulation
codes. The primary design goals were to require minimal information from the
user, allow users to easily supply their own data structures underneath the
solvers, and allow for easy incorporation of user-supplied linear solvers and
preconditioners.
--------------------------------------------------------------------------------
Update Information:
sundials-2.6.2-11.fc23 - Fixes for EPEL7 - Set mpif77 only for OpenMPI < 1.17
(EPEL7) - Set mpifort for OpenMPI > 1.17 (Fedora) - Set LDFLAGS for EPEL7 -
Hardened builds on <F23 - openmpi tests still crash/hang on i686 (Fedora 21) -
Rebuilt on Fedora 21 sundials-2.6.2-11.fc21 - Fixes for EPEL7 - Set mpif77
only for OpenMPI < 1.17 (EPEL7) - Set mpifort for OpenMPI > 1.17 (Fedora) - Set
LDFLAGS for EPEL7 - Hardened builds on <F23 - openmpi tests still crash/hang on
i686 (Fedora 21) - Rebuilt on Fedora 21 sundials-2.6.2-11.fc22 - Fixes for
EPEL7 - Set mpif77 only for OpenMPI < 1.17 (EPEL7) - Set mpifort for OpenMPI >
1.17 (Fedora) - Set LDFLAGS for EPEL7 - Hardened builds on <F23 - openmpi tests
still crash/hang on i686 (Fedora 21) - Rebuilt on Fedora 21
sundials-2.6.2-11.el7 - Fixes for EPEL7 - Set mpif77 only for OpenMPI < 1.17
(EPEL7) - Set mpifort for OpenMPI > 1.17 (Fedora) - Set LDFLAGS for EPEL7 -
Hardened builds on <F23 - openmpi tests still crash/hang on i686 (Fedora 21) -
Rebuilt on Fedora 21
--------------------------------------------------------------------------------
This update can be installed with the "yum" update programs. Use
su -c 'yum update sundials' at the command line.
For more information, refer to "Managing Software with yum",
available at https://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora EPEL GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
8 years, 4 months
Fedora EPEL 7 Update: php-myclabs-deep-copy-1.5.0-1.el7
by updates＠fedoraproject.org
--------------------------------------------------------------------------------
Fedora EPEL Update Notification
FEDORA-EPEL-2015-845ee89c9a
2015-11-29 18:53:49.838500
--------------------------------------------------------------------------------
Name : php-myclabs-deep-copy
Product : Fedora EPEL 7
Version : 1.5.0
Release : 1.el7
URL : https://github.com/myclabs/DeepCopy
Summary : Create deep copies (clones) of your objects
Description :
DeepCopy helps you create deep copies (clones) of your objects.
It is designed to handle cycles in the association graph.
--------------------------------------------------------------------------------
Update Information:
**Version 1.5.0** You can now add "type matchers" that will apply to any object
that matches a type. The object doesn't have to be in a property directly, it
can be in an array for example.
--------------------------------------------------------------------------------
This update can be installed with the "yum" update programs. Use
su -c 'yum update php-myclabs-deep-copy' at the command line.
For more information, refer to "Managing Software with yum",
available at https://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora EPEL GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
8 years, 4 months
Fedora EPEL 7 Update: php-theseer-autoload-1.21.0-1.el7
by updates＠fedoraproject.org
--------------------------------------------------------------------------------
Fedora EPEL Update Notification
FEDORA-EPEL-2015-8d88bbcc1c
2015-11-29 18:53:49.838454
--------------------------------------------------------------------------------
Name : php-theseer-autoload
Product : Fedora EPEL 7
Version : 1.21.0
Release : 1.el7
URL : https://github.com/theseer/Autoload
Summary : A tool and library to generate autoload code
Description :
The PHP AutoloadBuilder CLI tool phpab is a command line application
to automate the process of generating an autoload require file with
the option of creating static require lists as well as phar archives.
--------------------------------------------------------------------------------
Update Information:
**Version 1.21.0** * Added --hash option to explicitly choose hash algorithm
for phar generation (defaults to best available)
--------------------------------------------------------------------------------
This update can be installed with the "yum" update programs. Use
su -c 'yum update php-theseer-autoload' at the command line.
For more information, refer to "Managing Software with yum",
available at https://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora EPEL GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
8 years, 4 months
Fedora EPEL 7 Update: php-phpunit-PHPUnit-4.8.17-1.el7
by updates＠fedoraproject.org
--------------------------------------------------------------------------------
Fedora EPEL Update Notification
FEDORA-EPEL-2015-0a75e06acd
2015-11-29 18:53:49.838404
--------------------------------------------------------------------------------
Name : php-phpunit-PHPUnit
Product : Fedora EPEL 7
Version : 4.8.17
Release : 1.el7
URL : https://github.com/sebastianbergmann/phpunit
Summary : The PHP Unit Testing framework
Description :
PHPUnit is a family of PEAR packages that supports the development of
object-oriented PHP applications using the concepts and methods of Agile
Software Development, Extreme Programming, Test-Driven Development and
Design-by-Contract Development by providing an elegant and robust framework
for the creation, execution and analysis of Unit Tests.
--------------------------------------------------------------------------------
Update Information:
* Fixed #1935: PHP_CodeCoverage_Exception not handled properly ----
**Version 4.8.15 - 2015-10-22** Fixed * The backup of global state is now
properly restored when changes to global state are disallowed * The
__PHPUNIT_PHAR__ constant is now properly set when the PHPUnit PHAR is used as a
library **Version 4.8.14 - 2015-10-17** Fixed * Fixed #1892: --coverage-
text does not honor color setting
--------------------------------------------------------------------------------
This update can be installed with the "yum" update programs. Use
su -c 'yum update php-phpunit-PHPUnit' at the command line.
For more information, refer to "Managing Software with yum",
available at https://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora EPEL GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
8 years, 4 months
Fedora EPEL 7 Update: gnudos-1.8-4.el7
by updates＠fedoraproject.org
--------------------------------------------------------------------------------
Fedora EPEL Update Notification
FEDORA-EPEL-2015-784e87ef9d
2015-11-29 18:53:49.838332
--------------------------------------------------------------------------------
Name : gnudos
Product : Fedora EPEL 7
Version : 1.8
Release : 4.el7
URL : http://sites.google.com/site/mohammedisam2000/home/projects
Summary : The GnuDOS library for GNU/Linux
Description :
GnuDOS is a library of functions for use under the GNU/Linux console/xterm.
It provides four core utilities and three service programs. The core utilities
are Kbd (for keyboard handling), Screen (for screen handling), Dialogs (for
drawing dialog and input boxes), and Strings (for string manipulation
functions). The service programs are: prime (a file manager), mino (a text
editor), and fog (a console form designer).
GnuDOS is a group of utilities that were designed to introduce new users to
the GNU system. The tools included in the library have a look-and-feel
familiar to users of MS-DOS like systems. The aim is to provide users
accustomed to such systems a gentle way to learn how to use the GNU
operating system.
--------------------------------------------------------------------------------
Update Information:
More bug fixes!
--------------------------------------------------------------------------------
This update can be installed with the "yum" update programs. Use
su -c 'yum update gnudos' at the command line.
For more information, refer to "Managing Software with yum",
available at https://docs.fedoraproject.org/yum/.
All packages are signed with the Fedora EPEL GPG key. More details on the
GPG keys used by the Fedora Project can be found at
https://fedoraproject.org/keys
--------------------------------------------------------------------------------
8 years, 4 months