[Bug 2261618] New: python-zarr: FTBFS in Fedora rawhide/f40

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bugzilla＠redhat.com

30 Jan 2024 30 Jan '24

8:58 a.m.

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

Bug ID: 2261618 Summary: python-zarr: FTBFS in Fedora rawhide/f40 Product: Fedora Version: rawhide Status: NEW Component: python-zarr Assignee: quantum.analyst@gmail.com Reporter: releng@fedoraproject.org QA Contact: extras-qa@fedoraproject.org CC: epel-packagers-sig@lists.fedoraproject.org, jonathan@almalinux.org, python-packagers-sig@lists.fedoraproject.org, quantum.analyst@gmail.com Blocks: 2231791 (F40FTBFS) Target Milestone: --- Classification: Fedora

python-zarr failed to build from source in Fedora rawhide/f40

https://koji.fedoraproject.org/koji/taskinfo?taskID=112403747

For details on the mass rebuild see:

https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild Please fix python-zarr at your earliest convenience and set the bug's status to ASSIGNED when you start fixing it. If the bug remains in NEW state for 8 weeks, python-zarr will be orphaned. Before branching of Fedora 41, python-zarr will be retired, if it still fails to build.

For more details on the FTBFS policy, please visit: https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_...

Referenced Bugs:

https://bugzilla.redhat.com/show_bug.cgi?id=2231791 [Bug 2231791] Fedora 40 FTBFS Tracker

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bugzilla＠redhat.com

30 Jan 30 Jan

8:58 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

--- Comment #1 from Fedora Release Engineering releng@fedoraproject.org --- Created attachment 2013330 --> https://bugzilla.redhat.com/attachment.cgi?id=2013330&action=edit build.log

file build.log too big, will only attach last 32768 bytes

bugzilla＠redhat.com

8:58 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

--- Comment #2 from Fedora Release Engineering releng@fedoraproject.org --- Created attachment 2013331 --> https://bugzilla.redhat.com/attachment.cgi?id=2013331&action=edit root.log

file root.log too big, will only attach last 32768 bytes

bugzilla＠redhat.com

8:58 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

--- Comment #3 from Fedora Release Engineering releng@fedoraproject.org --- Created attachment 2013332 --> https://bugzilla.redhat.com/attachment.cgi?id=2013332&action=edit state.log

bugzilla＠redhat.com

13 Jun 13 Jun

1:01 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

Sandro gui1ty@penguinpee.nl changed:

What |Removed |Added ---------------------------------------------------------------------------- Blocks| |2291729

Referenced Bugs:

https://bugzilla.redhat.com/show_bug.cgi?id=2291729 [Bug 2291729] F41FailsToInstall: python3-hdmf+tqdm, python3-hdmf+zarr, python3-hdmf

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bugzilla＠redhat.com

1:04 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

Sandro gui1ty@penguinpee.nl changed:

What |Removed |Added ---------------------------------------------------------------------------- Blocks| |2291758

Referenced Bugs:

https://bugzilla.redhat.com/show_bug.cgi?id=2291758 [Bug 2291758] F41FailsToInstall: python3-lazy-ops

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bugzilla＠redhat.com

2:42 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

Sandro gui1ty@penguinpee.nl changed:

What |Removed |Added ---------------------------------------------------------------------------- Blocks| |2291849

Referenced Bugs:

https://bugzilla.redhat.com/show_bug.cgi?id=2291849 [Bug 2291849] F41FailsToInstall: python3-probeinterface

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bugzilla＠redhat.com

14 Jun 14 Jun

12:02 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

Gwyn Ciesla gwync@protonmail.com changed:

What |Removed |Added ---------------------------------------------------------------------------- Blocks| |2291985

Referenced Bugs:

https://bugzilla.redhat.com/show_bug.cgi?id=2291985 [Bug 2291985] F41FailsToInstall: python3-zarr

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bugzilla＠redhat.com

16 Jun 16 Jun

2:06 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

Zbigniew Jędrzejewski-Szmek zbyszek@in.waw.pl changed:

What |Removed |Added ---------------------------------------------------------------------------- Depends On| |2259530

Referenced Bugs:

https://bugzilla.redhat.com/show_bug.cgi?id=2259530 [Bug 2259530] python-lmdb fails to build with Python 3.13: implicit declaration of function ‘PyObject_AsReadBuffer’

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bugzilla＠redhat.com

3:06 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

Adam Williamson awilliam@redhat.com changed:

--- Comment #4 from Adam Williamson awilliam@redhat.com --- Elliott says it should be possible to drop zarr's dep on lmdb, which would help as fixing lmdb's build is not at all straightforward.

bugzilla＠redhat.com

3:12 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

--- Comment #5 from Adam Williamson awilliam@redhat.com --- With lmdb br removed, there are 21 test failures, which seem to fall into two buckets: issues with `create_array`, and issues with `listdir`.

bugzilla＠redhat.com

3:24 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

--- Comment #6 from Adam Williamson awilliam@redhat.com --- zarr is up to 2.18.2 now upstream, but still 21 test failures building that (you have to disable doc generation too as it now needs a sphinx module we don't have packaged). same 21 test failures building on F40 (Python 3.12) too, which seems odd since they claim to have 3.12 in CI upstream. will take a bit of investigation.

bugzilla＠redhat.com

18 Jun 18 Jun

5:22 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

Adam Williamson awilliam@redhat.com changed:

What |Removed |Added ---------------------------------------------------------------------------- Status|NEW |ON_QA

--- Comment #7 from Adam Williamson awilliam@redhat.com --- Fixed in https://bodhi.fedoraproject.org/updates/FEDORA-2024-4ba59f29c5 , pending signing. Thanks to Elliott for reporting the array test issues upstream as https://github.com/zarr-developers/zarr-python/issues/1678 . The listdir issues are caused by a newer fsspec, this is reported upstream as https://github.com/zarr-developers/zarr-python/issues/1819 . I've sent PRs to fix both issues - https://github.com/zarr-developers/zarr-python/pull/1972 and https://github.com/zarr-developers/zarr-python/pull/1970 - and backported them in the package build.

bugzilla＠redhat.com

5:23 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

Adam Williamson awilliam@redhat.com changed:

What |Removed |Added ---------------------------------------------------------------------------- Depends On|2259530 |

--- Comment #8 from Adam Williamson awilliam@redhat.com --- oh, forgot to mention, I dropped the lmdb build requirement as it's not critical. It causes some tests to be disabled, and trying to use the `LMDBStore` class would fail, but this is better than the entire package being non-installable.

Referenced Bugs:

https://bugzilla.redhat.com/show_bug.cgi?id=2259530 [Bug 2259530] python-lmdb fails to build with Python 3.13: implicit declaration of function ‘PyObject_AsReadBuffer’

bugzilla＠redhat.com

6:23 a.m.

New subject: [Bug 2261618] python-zarr: FTBFS in Fedora rawhide/f40

https://bugzilla.redhat.com/show_bug.cgi?id=2261618

Adam Williamson awilliam@redhat.com changed:

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