September 2014 - ml - Fedora Mailing-Lists

[python-scikit-learn] New upstream (0.15.2), bugfix

by Sergio Pascual

commit 7510bfc1302483ebe07e8110124f55919c1990d4 Author: Sergio Pascual <sergiopr(a)fis.ucm.es> Date: Tue Sep 16 15:30:43 2014 +0200 New upstream (0.15.2), bugfix .gitignore | 1 + python-scikit-learn.spec | 15 +++++++++--- sklearn-fix-test.patch | 56 +++++++++++---------------------------------- sources | 2 +- 4 files changed, 27 insertions(+), 47 deletions(-) --- diff --git a/.gitignore b/.gitignore index 9b8aa5f..b02b35c 100644 --- a/.gitignore +++ b/.gitignore @@ -4,3 +4,4 @@ /scikit-learn-0.15.0b2.tar.gz /scikit-learn-0.15.0.tar.gz /scikit-learn-0.15.1.tar.gz +/scikit-learn-0.15.2.tar.gz diff --git a/python-scikit-learn.spec b/python-scikit-learn.spec index bf9e558..3b104de 100644 --- a/python-scikit-learn.spec +++ b/python-scikit-learn.spec @@ -2,8 +2,8 @@ %global with_python3 1 Name: python-scikit-learn -Version: 0.15.1 -Release: 2%{?dist} +Version: 0.15.2 +Release: 1%{?dist} Summary: Machine learning in Python License: BSD @@ -12,8 +12,11 @@ Source0: https://pypi.python.org/packages/source/s/scikit-learn/%{upname}-%{vers Source1: system-six.py Source2: system-joblib.py Patch0: sklearn-unbundle-joblib.patch -Patch2: sklearn-unbundle-cblas.patch -Patch3: sklearn-fix-test.patch +Patch1: sklearn-unbundle-cblas.patch +# Disable a broken test +# Reported upstream +# https://github.com/scikit-learn/scikit-learn/issues/3648 +Patch2: sklearn-fix-test.patch BuildRequires: python2-devel BuildRequires: numpy scipy python-nose python-matplotlib @@ -56,6 +59,7 @@ efficient, accessible to everybody, and reusable in various contexts. %setup -n %{upname}-%{version} -q %patch0 -p1 +%patch1 -p1 # Code to load system six and joblib at runtime mkdir sklearn/externals/bundled @@ -124,6 +128,9 @@ popd %endif # with_python3 %changelog +* Tue Sep 16 2014 Sergio Pascual <sergiopr(a)fedoraproject.org> - 0.15.2-1 +- New upstream (0.15.2), bugfix + * Sun Aug 17 2014 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 0.15.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild diff --git a/sklearn-fix-test.patch b/sklearn-fix-test.patch index 7dce5bb..807ae3f 100644 --- a/sklearn-fix-test.patch +++ b/sklearn-fix-test.patch @@ -1,42 +1,14 @@ -diff -ur scikit-learn-0.14.1/sklearn/svm/tests/test_svm.py scikit-learn-0.14.1.fixtest/sklearn/svm/tests/test_svm.py ---- scikit-learn-0.14.1/sklearn/svm/tests/test_svm.py 2014-01-15 01:20:36.881367698 +0100 -+++ scikit-learn-0.14.1.fixtest/sklearn/svm/tests/test_svm.py 2014-01-15 01:21:50.448943529 +0100 -@@ -643,17 +643,17 @@ - assert_raises(ValueError, svc.fit, X, Y) - - --def test_timeout(): -- a = svm.SVC(kernel=lambda x, y: np.dot(x, y.T), probability=True, -- random_state=0, max_iter=1) -- with warnings.catch_warnings(record=True) as foo: -- # Hackish way to reset the warning counter -- from sklearn.svm import base -- base.__warningregistry__ = {} -- warnings.simplefilter("always") -- a.fit(X, Y) -- assert_equal(len(foo), 1, msg=foo) -- assert_equal(foo[0].category, ConvergenceWarning, msg=foo[0].category) -+#def test_timeout(): -+# a = svm.SVC(kernel=lambda x, y: np.dot(x, y.T), probability=True, -+# random_state=0, max_iter=1) -+# with warnings.catch_warnings(record=True) as foo: -+# # Hackish way to reset the warning counter -+# from sklearn.svm import base -+# base.__warningregistry__ = {} -+# warnings.simplefilter("always") -+# a.fit(X, Y) -+# assert_equal(len(foo), 1, msg=foo) -+# assert_equal(foo[0].category, ConvergenceWarning, msg=foo[0].category) - - - def test_consistent_proba(): -diff -ur scikit-learn-0.14.1/sklearn/cluster/bicluster/tests/test_utils.py scikit-learn-0.14.1.fixtest/sklearn/cluster/bicluster/tests/test_utils.py ---- scikit-learn-0.14.1/sklearn/cluster/bicluster/tests/test_utils.py 2014-01-15 01:44:29.133535947 +0100 -+++ scikit-learn-0.14.1.fixtest/sklearn/cluster/bicluster/tests/test_utils.py 2014-01-15 01:46:08.825309370 +0100 -@@ -40,4 +40,6 @@ - [6, 7], - [18, 19]]) - submatrix[:] = -1 -+ if issparse(X): -+ X = X.todense() - assert_true(np.all(X != -1)) +diff -ur scikit-learn-0.15.2/sklearn/linear_model/tests/test_base.py scikit-learn-0.15.2_3648/sklearn/linear_model/tests/test_base.py +--- scikit-learn-0.15.2/sklearn/linear_model/tests/test_base.py 2014-09-16 13:30:10.894575040 +0200 ++++ scikit-learn-0.15.2_3648/sklearn/linear_model/tests/test_base.py 2014-09-16 13:31:57.768474897 +0200 +@@ -65,8 +65,8 @@ + assert_equal(lr2_without_intercept.coef_.ndim, + lr3_without_intercept.coef_.ndim) + +- +-def test_linear_regression_sparse(random_state=0): ++# ++def __disable_test_linear_regression_sparse(random_state=0): + "Test that linear regression also works with sparse data" + random_state = check_random_state(random_state) + n = 100 diff --git a/sources b/sources index 2c333b7..59a1b7a 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -236aa05b1a6d067c28f34d5e9942af17 scikit-learn-0.15.1.tar.gz +d9822ad0238e17b382a3c756ea94fe0d scikit-learn-0.15.2.tar.gz

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File scikit-learn-0.15.2.tar.gz uploaded to lookaside cache by sergiopr

by Sergio Pascual

A file has been added to the lookaside cache for python-scikit-learn: d9822ad0238e17b382a3c756ea94fe0d scikit-learn-0.15.2.tar.gz

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[shogun] updated to new snapshot git20140901.705b7dea7093cb094fe90fcebac20b7e7d1debcd

by Björn 'besser82' Esser

Summary of changes: a9a9b9a... updated to new snapshot git20140901.705b7dea7093cb094fe90fc (*) (*) This commit already existed in another branch; no separate mail sent

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[shogun/f21] updated to new snapshot git20140901.705b7dea7093cb094fe90fcebac20b7e7d1debcd

by Björn 'besser82' Esser

commit a9a9b9a8edcfa3bb005fcc75765327d440fd6ae5 Author: Björn Esser <bjoern.esser(a)gmail.com> Date: Mon Sep 1 10:22:37 2014 +0200 updated to new snapshot git20140901.705b7dea7093cb094fe90fcebac20b7e7d1debcd shogun.spec | 9 ++++++--- sources | 2 +- 2 files changed, 7 insertions(+), 4 deletions(-) --- diff --git a/shogun.spec b/shogun.spec index 50f0b6d..3a92cce 100644 --- a/shogun.spec +++ b/shogun.spec @@ -2,8 +2,8 @@ #%%global rel_build 1 # Settings used for build from snapshots. -%{!?rel_build:%global commit 96f3cf3ce58514299f98e688b7c43e057ad4fa41} -%{!?rel_build:%global commit_date 20140804} +%{!?rel_build:%global commit 705b7dea7093cb094fe90fcebac20b7e7d1debcd} +%{!?rel_build:%global commit_date 20140901} %{!?rel_build:%global shortcommit %(c=%{commit};echo ${c:0:7})} %{!?rel_build:%global gitver git%{commit_date}-%{shortcommit}} %{!?rel_build:%global gitrel .git%{commit_date}.%{shortcommit}} @@ -80,7 +80,7 @@ of it's 'no-redistribute', 'no-commercial-use' license. Name: shogun Version: %{branch}.0.1 -Release: 0.28%{?gitrel}%{?dist} +Release: 0.29%{?gitrel}%{?dist} Summary: Large Scale Machine Learning Toolbox # ===== License-breakdown ===== @@ -961,6 +961,9 @@ popd ############################################################################### %changelog +* Mon Sep 01 2014 Björn Esser <bjoern.esser(a)gmail.com> - 3.2.0.1-0.29.git20140901.705b7de +- updated to new snapshot git20140901.705b7dea7093cb094fe90fcebac20b7e7d1debcd + * Mon Aug 18 2014 Fedora Release Engineering <rel-eng(a)lists.fedoraproject.org> - 3.2.0.1-0.28.git20140804.96f3cf3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild diff --git a/sources b/sources index e31cfdd..c741fa4 100644 --- a/sources +++ b/sources @@ -1,2 +1,2 @@ -67b37fde0024a66daa286353605d4558 shogun-3.2.0.1-git20140804-96f3cf3.tar.gz +4fc43c920c1ec435f95d70781e644109 shogun-3.2.0.1-git20140901-705b7de.tar.gz 073b984d8798ea1594f5e44d85b20d66 gmock-1.7.0.zip

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File shogun-3.2.0.1-git20140901-705b7de.tar.gz uploaded to lookaside cache by besser82

by Björn 'besser82' Esser

A file has been added to the lookaside cache for shogun: 4fc43c920c1ec435f95d70781e644109 shogun-3.2.0.1-git20140901-705b7de.tar.gz

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[shogun-data] updated to new snapshot git20140818.24b8341a99fc2d3e2ad40f372578ea91bdbedaf6

by Björn 'besser82' Esser