Fedora EPEL 6 Update: R-qtl-1.41.6-1.el6

-------------------------------------------------------------------------------- Fedora EPEL Update Notification FEDORA-EPEL-2017-276d5c34c7 2017-07-03 03:22:00.859536 -------------------------------------------------------------------------------- Name : R-qtl Product : Fedora EPEL 6 Version : 1.41.6 Release : 1.el6 URL : http://www.rqtl.org/ Summary : Tools for analyzing QTL experiments Description : R-qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental crosses. Our goal is to make complex QTL mapping methods widely accessible and allow users to focus on modeling rather than computing. A key component of computational methods for QTL mapping is the hidden Markov model (HMM) technology for dealing with missing genotype data. We have implemented the main HMM algorithms, with allowance for the presence of genotyping errors, for backcrosses, intercrosses, and phase-known four-way crosses. The current version of R-qtl includes facilities for estimating genetic maps, identifying genotyping errors, and performing single-QTL genome scans and two-QTL, two-dimensional genome scans, by interval mapping (with the EM algorithm), Haley-Knott regression, and multiple imputation. All of this may be done in the presence of covariates (such as sex, age or treatment). One may also fit higher-order QTL models by multiple imputation and Haley-Knott regression. -------------------------------------------------------------------------------- Update Information: Version 1.41, 2017-06-11 Major changes: * None. Minor changes: * Fixed bugs in formMarkerCovar to give better error messages if markers aren't found. * Fixed a bug in reviseXdata in case of intercross with both sexes but backward direction only. * Fixed a bug in mqmscan that gave an error about duplicate row names. * Fixed a bug in summary.scantwo for the case of autosome/X chromosome specific permutations. * Fix bugs in pull.argmaxgeno and pull.genoprob for 4-way crosses with include.pos.info=TRUE. (Need to account for map being a matrix.) -------------------------------------------------------------------------------- This update can be installed with the "yum" update programs. Use su -c 'yum update R-qtl' at the command line. For more information, refer to "YUM", available at https://access.redhat.com/documentation/en-US/Red_Hat_Enterprise_Linux/7/... All packages are signed with the Fedora EPEL GPG key. More details on the GPG keys used by the Fedora Project can be found at https://fedoraproject.org/keys --------------------------------------------------------------------------------