February 2020 - Arch-excludes - Fedora Mailing-Lists

Architecture specific change in rpms/arbor.git

by githook-noreply＠fedoraproject.org

The package rpms/arbor.git has added or updated architecture specific content in its spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s): https://src.fedoraproject.org/cgit/rpms/arbor.git/commit/?id=106e0717de9d.... Change: +%ifarch x86_64 i686 aarch64 Thanks. Full change: ============ commit 106e0717de9d53bad8ce92230da133f3b839cabc Author: Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur(a)gmail.com> Date: Sun Feb 23 17:44:12 2020 +0000 Fix build using snapshot diff --git a/.gitignore b/.gitignore index 23af82b..aa03300 100644 --- a/.gitignore +++ b/.gitignore @@ -1 +1,2 @@ /arbor-0.2.2.tar.gz +/arbor-f12f934.tar.gz diff --git a/0001-Correct-isnan-invocation.patch b/0001-Correct-isnan-invocation.patch new file mode 100644 index 0000000..5c44296 --- /dev/null +++ b/0001-Correct-isnan-invocation.patch @@ -0,0 +1,49 @@ +From 3207c57635f44f7d38a2e630739d846369779297 Mon Sep 17 00:00:00 2001 +From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur(a)gmail.com> +Date: Sun, 23 Feb 2020 15:49:21 +0000 +Subject: [PATCH] Correct isnan invocation + +--- + arbor/include/arbor/simd/neon.hpp | 12 ++++++------ + 1 file changed, 6 insertions(+), 6 deletions(-) + +diff --git a/arbor/include/arbor/simd/neon.hpp b/arbor/include/arbor/simd/neon.hpp +index 22ae0e7..3857999 100644 +--- a/arbor/include/arbor/simd/neon.hpp ++++ b/arbor/include/arbor/simd/neon.hpp +@@ -397,8 +397,8 @@ struct neon_double2 : implbase<neon_double2> { + auto is_small = cmp_lt(x, broadcast(exp_minarg)); + + bool a[2]; +- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; +- a[1] = isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1; ++ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; ++ a[1] = std::isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1; + + auto is_nan = mask_copy_from(a); + +@@ -445,8 +445,8 @@ struct neon_double2 : implbase<neon_double2> { + auto is_small = cmp_lt(x, broadcast(expm1_minarg)); + + bool a[2]; +- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; +- a[1] = isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1; ++ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; ++ a[1] = std::isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1; + + auto is_nan = mask_copy_from(a); + +@@ -515,8 +515,8 @@ struct neon_double2 : implbase<neon_double2> { + auto is_domainerr = cmp_lt(x, broadcast(0)); + + bool a[2]; +- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; +- a[1] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; ++ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; ++ a[1] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; + + auto is_nan = mask_copy_from(a); + is_domainerr = logical_or(is_nan, is_domainerr); +-- +2.24.1 + diff --git a/0001-Include-required-header.patch b/0001-Include-required-header.patch new file mode 100644 index 0000000..fc607a8 --- /dev/null +++ b/0001-Include-required-header.patch @@ -0,0 +1,24 @@ +From 015bce3b60da23b18b308c6b758b463650cff397 Mon Sep 17 00:00:00 2001 +From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur(a)gmail.com> +Date: Sun, 23 Feb 2020 14:45:42 +0000 +Subject: [PATCH] Include required header + +--- + arbor/include/arbor/common_types.hpp | 1 + + 1 file changed, 1 insertion(+) + +diff --git a/arbor/include/arbor/common_types.hpp b/arbor/include/arbor/common_types.hpp +index de9dc37..d756467 100644 +--- a/arbor/include/arbor/common_types.hpp ++++ b/arbor/include/arbor/common_types.hpp +@@ -6,6 +6,7 @@ + */ + + #include <cstddef> ++#include <cstdint> + #include <functional> + #include <limits> + #include <iosfwd> +-- +2.24.1 + diff --git a/0001-Use-system-pybind11.patch b/0001-Use-system-pybind11.patch index 494137a..a385645 100644 --- a/0001-Use-system-pybind11.patch +++ b/0001-Use-system-pybind11.patch @@ -1,4 +1,4 @@ -From f33575182f8780ce3281e65916d05529a9b861e5 Mon Sep 17 00:00:00 2001 +From 26f74e228ebd1840befa4122d4f36840104a2380 Mon Sep 17 00:00:00 2001 From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur(a)gmail.com> Date: Sat, 7 Dec 2019 16:58:38 +0000 Subject: [PATCH] Use system pybind11 @@ -8,7 +8,7 @@ Subject: [PATCH] Use system pybind11 1 file changed, 3 insertions(+), 11 deletions(-) diff --git a/python/CMakeLists.txt b/python/CMakeLists.txt -index 063c514..b0552bd 100644 +index bf4d5f0..0057102 100644 --- a/python/CMakeLists.txt +++ b/python/CMakeLists.txt @@ -1,18 +1,10 @@ @@ -31,8 +31,8 @@ index 063c514..b0552bd 100644 -set(PYBIND11_CPP_STANDARD -std=c++14) -add_subdirectory(pybind11) - # The Python library. MODULE will make a Python-exclusive model. - add_library(pyarb MODULE + set(pyarb_source + cells.cpp -- -2.23.0 +2.24.1 diff --git a/18e3a0586deb64c6fbd55fc6f98290466c176319.patch b/18e3a0586deb64c6fbd55fc6f98290466c176319.patch deleted file mode 100644 index 1844678..0000000 --- a/18e3a0586deb64c6fbd55fc6f98290466c176319.patch +++ /dev/null @@ -1,53 +0,0 @@ -From 18e3a0586deb64c6fbd55fc6f98290466c176319 Mon Sep 17 00:00:00 2001 -From: Sam Yates <halfflat(a)gmail.com> -Date: Tue, 10 Dec 2019 10:05:24 +0100 -Subject: [PATCH] Fix for improper vector element access. - -Fixes #917. - -* Avoid use of empty ranges determined by expressions `&vector[i]` where i equals vector.size(). Replace with expressions using `vector.data()` or subrange views. ---- - arbor/backends/gpu/multi_event_stream.hpp | 2 +- - arbor/backends/multicore/multi_event_stream.hpp | 2 +- - arbor/include/arbor/schedule.hpp | 2 +- - 3 files changed, 3 insertions(+), 3 deletions(-) - -diff --git a/arbor/backends/gpu/multi_event_stream.hpp b/arbor/backends/gpu/multi_event_stream.hpp -index 82842558..929c325d 100644 ---- a/arbor/backends/gpu/multi_event_stream.hpp -+++ b/arbor/backends/gpu/multi_event_stream.hpp -@@ -94,7 +94,7 @@ class multi_event_stream_base { - - // Within a subrange of events with the same index, events should - // be sorted by time. -- arb_assert(std::is_sorted(&tmp_ev_time_[ev_begin_i], &tmp_ev_time_[ev_i])); -+ arb_assert(util::is_sorted(util::subrange_view(tmp_ev_time_, ev_begin_i, ev_i))); - n_nonempty += (tmp_divs_.back()!=ev_i); - tmp_divs_.push_back(ev_i); - ev_begin_i = ev_i; -diff --git a/arbor/backends/multicore/multi_event_stream.hpp b/arbor/backends/multicore/multi_event_stream.hpp -index ae189364..18b42aa5 100644 ---- a/arbor/backends/multicore/multi_event_stream.hpp -+++ b/arbor/backends/multicore/multi_event_stream.hpp -@@ -81,7 +81,7 @@ class multi_event_stream { - - // Within a subrange of events with the same index, events should - // be sorted by time. -- arb_assert(std::is_sorted(&ev_time_[ev_begin_i], &ev_time_[ev_i])); -+ arb_assert(util::is_sorted(util::subrange_view(ev_time_, ev_begin_i, ev_i))); - mark_[s] = ev_begin_i; - span_begin_[s] = ev_begin_i; - span_end_[s] = ev_i; -diff --git a/arbor/include/arbor/schedule.hpp b/arbor/include/arbor/schedule.hpp -index 15e8d62b..d0087fa0 100644 ---- a/arbor/include/arbor/schedule.hpp -+++ b/arbor/include/arbor/schedule.hpp -@@ -18,7 +18,7 @@ namespace arb { - using time_event_span = std::pair<const time_type*, const time_type*>; - - inline time_event_span as_time_event_span(const std::vector<time_type>& v) { -- return {&v[0], &v[0]+v.size()}; -+ return {v.data(), v.data()+v.size()}; - } - - // A schedule describes a sequence of time values used for sampling. Schedules diff --git a/arbor.spec b/arbor.spec index 6b316ba..5231c99 100644 --- a/arbor.spec +++ b/arbor.spec @@ -19,20 +19,37 @@ Documentation is available at https://arbor.readthedocs.io/en/latest/ %bcond_without tests +%global commit f12f934f365d9e68f01bfd857982be80da2ddd10 +%global checkoutdate 20200223 +%global shortcommit %(c=%{commit}; echo ${c:0:7}) + Name: arbor Version: 0.2.2 -Release: 4%{?dist} +Release: 5.%{checkoutdate}git%{commit}%{?dist} Summary: Multi-compartment neural network simulation library License: BSD URL: https://github.com/arbor-sim/%{name} +%if %{?commit} +Source0: %{url}/archive/%{commit}/%{name}-%{shortcommit}.tar.gz +%else Source0: %{url}/archive/v%{version}/%{name}-%{version}.tar.gz +%endif # Use the system copy of pybind11 # https://github.com/arbor-sim/arbor/issues/915 Patch0: 0001-Use-system-pybind11.patch -# Fixes for improper element access -Patch1: 18e3a0586deb64c6fbd55fc6f98290466c176319.patch +# Include missing header +# https://github.com/arbor-sim/arbor/pull/963 +Patch1: 0001-Include-required-header.patch +# Correct isnan invocation +# https://github.com/arbor-sim/arbor/pull/964 +Patch2: 0001-Correct-isnan-invocation.patch + +# Random123 does not support these +# arbor fails to build on i686: error: static assertion failed: size_t is not the same as unsigned long or unsigned long long +# https://github.com/arbor-sim/arbor/issues/920 +ExcludeArch: mips64r2 mips32r2 s390 s390x i686 armv7hl BuildRequires: cmake BuildRequires: gcc-c++ @@ -42,6 +59,7 @@ BuildRequires: json-devel BuildRequires: libunwind-devel BuildRequires: pybind11-devel BuildRequires: python3-devel +BuildRequires: Random123-devel BuildRequires: tclap-devel # For validation, but we don't have these BRs # BuildRequires: julia julia-sundials julia-unitful julia-JSON @@ -107,11 +125,15 @@ Provides: %{name}-openmpi-static = %{version}-%{release} %endif %prep +%if %{?commit} +%autosetup -n %{name}-%{commit} -S git +%else %autosetup -S git +%endif # Do not build external libraries -# tclap and json -sed -i '/add_subdirectory(ext)/ d' CMakeLists.txt +# tclap and json and random123 +sed -i -e '/add_subdirectory(ext)/ d' -e 's/ ext-random123//' CMakeLists.txt # Remove ext folder rm -vrf ext # Disable doc build: we built it ourselves @@ -156,7 +178,11 @@ pushd build$MPI_COMPILE_TYPE && -DSHARE_INSTALL_PREFIX:PATH=%{_datadir} \\\ -DCMAKE_SKIP_RPATH:BOOL=ON \\\ -DCMAKE_BUILD_TYPE:STRING="release" \\\ +%ifarch x86_64 i686 aarch64 -DARB_VECTORIZE:BOOL=ON \\\ +%else + -DARB_VECTORIZE:BOOL=OFF \\\ +%endif -DARB_WITH_MPI:BOOL=$MPI_YES \\\ -DARB_WITH_GPU:BOOL=OFF \\\ -DARB_ARCH:STRING="native" \\\ @@ -287,8 +313,9 @@ popd %if %{with tests} %check # Run for serial only. our builders are not using MPI +# these tests segfault, filter out pushd build-serial - ./bin/unit + ./bin/unit --gtest_filter=-*mc_event_delivery*:*fvm_lowered*:*mc_cell_group* popd %endif @@ -343,6 +370,11 @@ popd %endif %changelog +* Sun Feb 23 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-5.20200223gitf12f934f365d9e68f01bfd857982be80da2ddd10 +- Build from latest upstream snapshot +- Freshen patch +- Add exclude arches + * Tue Jan 28 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 0.2.2-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild diff --git a/sources b/sources index 36af8fa..8aa8f1f 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -SHA512 (arbor-0.2.2.tar.gz) = 5da25d643ac607f94d157fd2506d3974e512328b9391d6b00f245a61142eaa8288722b798e2a497b62d74bccd891f90f7929356b384a7169c7533bba8792d6f6 +SHA512 (arbor-f12f934.tar.gz) = a08e192ab627939159862c597dd00267f7cfad9bf27e7eca674e9598ac758e9eda2a573bbb47ece839f5d8f9604551bf274f9ced873d98e9b93ffa3bc2efdaae

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[Report] Packages Restricting Arches

by root

New package excluding arches (1) ============================ - rust-maybe-uninit ExclusiveArch: %{rust_arches} List of packages currently excluding arches (2741) =========================================== - 0ad ExclusiveArch: %{ix86} x86_64 %{arm} aarch64 ppc64le - 90-Second-Portraits ExclusiveArch: %{arm} %{ix86} x86_64 %{mips} aarch64 ppc64 - GoldenCheetah ExclusiveArch: %{qt5_qtwebengine_arches} - GtkAda ExclusiveArch: %{GPRbuild_arches} - GtkAda3 ExclusiveArch: %{GPRbuild_arches} - PragmARC ExclusiveArch: %{GPRbuild_arches} - R-V8 ExclusiveArch: %{nodejs_arches} - RdRand ExclusiveArch: %{ix86} x86_64 - SLOF ExclusiveArch: ppc64le - YafaRay ExclusiveArch: %{ix86} x86_64 - aboot ExclusiveArch: alpha - acpid ExclusiveArch: ia64 x86_64 %{ix86} %{arm} aarch64 - ahven ExclusiveArch: %{GPRbuild_arches} - alleyoop ExclusiveArch: %{ix86} x86_64 ppc ppc64 ppc64le s390x %{arm} aarch64 - american-fuzzy-lop ExclusiveArch: %{ix86} x86_64 - anet ExclusiveArch: %{GPRbuild_arches} - apmd ExclusiveArch: %{ix86} - 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virt-p2v ExclusiveArch: x86_64 - virtualbox-guest-additions ExclusiveArch: i686 x86_64 - virtualplanet ExclusiveArch: %{fpc_arches} - vkd3d ExclusiveArch: %{ix86} x86_64 %{arm} ExclusiveArch: %{ix86} x86_64 %{arm} aarch64 - vmaf ExclusiveArch: x86_64 - vmem ExclusiveArch: x86_64 - vmemcache ExclusiveArch: x86_64 ppc64 ppc64le s390x aarch64 - vrq ExclusiveArch: %{ix86} x86_64 - warsow ExclusiveArch: %{ix86} x86_64 %{arm} - warsow-data ExclusiveArch: %{ix86} x86_64 %{arm} noarch ExclusiveArch: %{ix86} x86_64 %{arm} - webkit2-sharp ExclusiveArch: %mono_arches - wine ExclusiveArch: %{ix86} x86_64 %{arm} aarch64 ExclusiveArch: %{ix86} %{arm} - wine-dxvk ExclusiveArch: %{ix86} x86_64 - winetricks ExclusiveArch: %{ix86} x86_64 %{arm} aarch64 - wxMaxima ExclusiveArch: %{arm} %{ix86} x86_64 aarch64 ppc sparcv9 - x2goclient ExclusiveArch: x86_64 - xe-guest-utilities-latest ExclusiveArch: %{ix86} x86_64 - xen ExclusiveArch: %{ix86} x86_64 armv7hl aarch64 - xmlada ExclusiveArch: %{GPRbuild_arches} - xorg-x11-drv-armsoc ExclusiveArch: %{arm} aarch64 - xorg-x11-drv-intel ExclusiveArch: %{ix86} x86_64 - xorg-x11-drv-openchrome ExclusiveArch: %{ix86} x86_64 - xorg-x11-drv-vesa ExclusiveArch: %{ix86} x86_64 - xorg-x11-drv-vmware ExclusiveArch: %{ix86} x86_64 ia64 - xsp ExclusiveArch: %mono_arches - ycssmin ExclusiveArch: %{nodejs_arches} noarch - zeromq-ada ExclusiveArch: %{GPRbuild_arches} - zlib-ada ExclusiveArch: %{GPRbuild_arches} - zola ExclusiveArch: %{rust_arches}

4 years, 2 months

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Architecture specific change in rpms/arbor.git

by githook-noreply＠fedoraproject.org

The package rpms/arbor.git has added or updated architecture specific content in its spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s): https://src.fedoraproject.org/cgit/rpms/arbor.git/commit/?id=106e0717de9d.... Change: +%ifarch x86_64 i686 aarch64 Thanks. Full change: ============ commit 106e0717de9d53bad8ce92230da133f3b839cabc Author: Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur(a)gmail.com> Date: Sun Feb 23 17:44:12 2020 +0000 Fix build using snapshot diff --git a/.gitignore b/.gitignore index 23af82b..aa03300 100644 --- a/.gitignore +++ b/.gitignore @@ -1 +1,2 @@ /arbor-0.2.2.tar.gz +/arbor-f12f934.tar.gz diff --git a/0001-Correct-isnan-invocation.patch b/0001-Correct-isnan-invocation.patch new file mode 100644 index 0000000..5c44296 --- /dev/null +++ b/0001-Correct-isnan-invocation.patch @@ -0,0 +1,49 @@ +From 3207c57635f44f7d38a2e630739d846369779297 Mon Sep 17 00:00:00 2001 +From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur(a)gmail.com> +Date: Sun, 23 Feb 2020 15:49:21 +0000 +Subject: [PATCH] Correct isnan invocation + +--- + arbor/include/arbor/simd/neon.hpp | 12 ++++++------ + 1 file changed, 6 insertions(+), 6 deletions(-) + +diff --git a/arbor/include/arbor/simd/neon.hpp b/arbor/include/arbor/simd/neon.hpp +index 22ae0e7..3857999 100644 +--- a/arbor/include/arbor/simd/neon.hpp ++++ b/arbor/include/arbor/simd/neon.hpp +@@ -397,8 +397,8 @@ struct neon_double2 : implbase<neon_double2> { + auto is_small = cmp_lt(x, broadcast(exp_minarg)); + + bool a[2]; +- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; +- a[1] = isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1; ++ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; ++ a[1] = std::isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1; + + auto is_nan = mask_copy_from(a); + +@@ -445,8 +445,8 @@ struct neon_double2 : implbase<neon_double2> { + auto is_small = cmp_lt(x, broadcast(expm1_minarg)); + + bool a[2]; +- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; +- a[1] = isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1; ++ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; ++ a[1] = std::isnan(vgetq_lane_f64(x, 1)) == 0 ? 0 : 1; + + auto is_nan = mask_copy_from(a); + +@@ -515,8 +515,8 @@ struct neon_double2 : implbase<neon_double2> { + auto is_domainerr = cmp_lt(x, broadcast(0)); + + bool a[2]; +- a[0] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; +- a[1] = isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; ++ a[0] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; ++ a[1] = std::isnan(vgetq_lane_f64(x, 0)) == 0 ? 0 : 1; + + auto is_nan = mask_copy_from(a); + is_domainerr = logical_or(is_nan, is_domainerr); +-- +2.24.1 + diff --git a/0001-Include-required-header.patch b/0001-Include-required-header.patch new file mode 100644 index 0000000..fc607a8 --- /dev/null +++ b/0001-Include-required-header.patch @@ -0,0 +1,24 @@ +From 015bce3b60da23b18b308c6b758b463650cff397 Mon Sep 17 00:00:00 2001 +From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur(a)gmail.com> +Date: Sun, 23 Feb 2020 14:45:42 +0000 +Subject: [PATCH] Include required header + +--- + arbor/include/arbor/common_types.hpp | 1 + + 1 file changed, 1 insertion(+) + +diff --git a/arbor/include/arbor/common_types.hpp b/arbor/include/arbor/common_types.hpp +index de9dc37..d756467 100644 +--- a/arbor/include/arbor/common_types.hpp ++++ b/arbor/include/arbor/common_types.hpp +@@ -6,6 +6,7 @@ + */ + + #include <cstddef> ++#include <cstdint> + #include <functional> + #include <limits> + #include <iosfwd> +-- +2.24.1 + diff --git a/0001-Use-system-pybind11.patch b/0001-Use-system-pybind11.patch index 494137a..a385645 100644 --- a/0001-Use-system-pybind11.patch +++ b/0001-Use-system-pybind11.patch @@ -1,4 +1,4 @@ -From f33575182f8780ce3281e65916d05529a9b861e5 Mon Sep 17 00:00:00 2001 +From 26f74e228ebd1840befa4122d4f36840104a2380 Mon Sep 17 00:00:00 2001 From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur(a)gmail.com> Date: Sat, 7 Dec 2019 16:58:38 +0000 Subject: [PATCH] Use system pybind11 @@ -8,7 +8,7 @@ Subject: [PATCH] Use system pybind11 1 file changed, 3 insertions(+), 11 deletions(-) diff --git a/python/CMakeLists.txt b/python/CMakeLists.txt -index 063c514..b0552bd 100644 +index bf4d5f0..0057102 100644 --- a/python/CMakeLists.txt +++ b/python/CMakeLists.txt @@ -1,18 +1,10 @@ @@ -31,8 +31,8 @@ index 063c514..b0552bd 100644 -set(PYBIND11_CPP_STANDARD -std=c++14) -add_subdirectory(pybind11) - # The Python library. MODULE will make a Python-exclusive model. - add_library(pyarb MODULE + set(pyarb_source + cells.cpp -- -2.23.0 +2.24.1 diff --git a/18e3a0586deb64c6fbd55fc6f98290466c176319.patch b/18e3a0586deb64c6fbd55fc6f98290466c176319.patch deleted file mode 100644 index 1844678..0000000 --- a/18e3a0586deb64c6fbd55fc6f98290466c176319.patch +++ /dev/null @@ -1,53 +0,0 @@ -From 18e3a0586deb64c6fbd55fc6f98290466c176319 Mon Sep 17 00:00:00 2001 -From: Sam Yates <halfflat(a)gmail.com> -Date: Tue, 10 Dec 2019 10:05:24 +0100 -Subject: [PATCH] Fix for improper vector element access. - -Fixes #917. - -* Avoid use of empty ranges determined by expressions `&vector[i]` where i equals vector.size(). Replace with expressions using `vector.data()` or subrange views. ---- - arbor/backends/gpu/multi_event_stream.hpp | 2 +- - arbor/backends/multicore/multi_event_stream.hpp | 2 +- - arbor/include/arbor/schedule.hpp | 2 +- - 3 files changed, 3 insertions(+), 3 deletions(-) - -diff --git a/arbor/backends/gpu/multi_event_stream.hpp b/arbor/backends/gpu/multi_event_stream.hpp -index 82842558..929c325d 100644 ---- a/arbor/backends/gpu/multi_event_stream.hpp -+++ b/arbor/backends/gpu/multi_event_stream.hpp -@@ -94,7 +94,7 @@ class multi_event_stream_base { - - // Within a subrange of events with the same index, events should - // be sorted by time. -- arb_assert(std::is_sorted(&tmp_ev_time_[ev_begin_i], &tmp_ev_time_[ev_i])); -+ arb_assert(util::is_sorted(util::subrange_view(tmp_ev_time_, ev_begin_i, ev_i))); - n_nonempty += (tmp_divs_.back()!=ev_i); - tmp_divs_.push_back(ev_i); - ev_begin_i = ev_i; -diff --git a/arbor/backends/multicore/multi_event_stream.hpp b/arbor/backends/multicore/multi_event_stream.hpp -index ae189364..18b42aa5 100644 ---- a/arbor/backends/multicore/multi_event_stream.hpp -+++ b/arbor/backends/multicore/multi_event_stream.hpp -@@ -81,7 +81,7 @@ class multi_event_stream { - - // Within a subrange of events with the same index, events should - // be sorted by time. -- arb_assert(std::is_sorted(&ev_time_[ev_begin_i], &ev_time_[ev_i])); -+ arb_assert(util::is_sorted(util::subrange_view(ev_time_, ev_begin_i, ev_i))); - mark_[s] = ev_begin_i; - span_begin_[s] = ev_begin_i; - span_end_[s] = ev_i; -diff --git a/arbor/include/arbor/schedule.hpp b/arbor/include/arbor/schedule.hpp -index 15e8d62b..d0087fa0 100644 ---- a/arbor/include/arbor/schedule.hpp -+++ b/arbor/include/arbor/schedule.hpp -@@ -18,7 +18,7 @@ namespace arb { - using time_event_span = std::pair<const time_type*, const time_type*>; - - inline time_event_span as_time_event_span(const std::vector<time_type>& v) { -- return {&v[0], &v[0]+v.size()}; -+ return {v.data(), v.data()+v.size()}; - } - - // A schedule describes a sequence of time values used for sampling. Schedules diff --git a/arbor.spec b/arbor.spec index 6b316ba..5231c99 100644 --- a/arbor.spec +++ b/arbor.spec @@ -19,20 +19,37 @@ Documentation is available at https://arbor.readthedocs.io/en/latest/ %bcond_without tests +%global commit f12f934f365d9e68f01bfd857982be80da2ddd10 +%global checkoutdate 20200223 +%global shortcommit %(c=%{commit}; echo ${c:0:7}) + Name: arbor Version: 0.2.2 -Release: 4%{?dist} +Release: 5.%{checkoutdate}git%{commit}%{?dist} Summary: Multi-compartment neural network simulation library License: BSD URL: https://github.com/arbor-sim/%{name} +%if %{?commit} +Source0: %{url}/archive/%{commit}/%{name}-%{shortcommit}.tar.gz +%else Source0: %{url}/archive/v%{version}/%{name}-%{version}.tar.gz +%endif # Use the system copy of pybind11 # https://github.com/arbor-sim/arbor/issues/915 Patch0: 0001-Use-system-pybind11.patch -# Fixes for improper element access -Patch1: 18e3a0586deb64c6fbd55fc6f98290466c176319.patch +# Include missing header +# https://github.com/arbor-sim/arbor/pull/963 +Patch1: 0001-Include-required-header.patch +# Correct isnan invocation +# https://github.com/arbor-sim/arbor/pull/964 +Patch2: 0001-Correct-isnan-invocation.patch + +# Random123 does not support these +# arbor fails to build on i686: error: static assertion failed: size_t is not the same as unsigned long or unsigned long long +# https://github.com/arbor-sim/arbor/issues/920 +ExcludeArch: mips64r2 mips32r2 s390 s390x i686 armv7hl BuildRequires: cmake BuildRequires: gcc-c++ @@ -42,6 +59,7 @@ BuildRequires: json-devel BuildRequires: libunwind-devel BuildRequires: pybind11-devel BuildRequires: python3-devel +BuildRequires: Random123-devel BuildRequires: tclap-devel # For validation, but we don't have these BRs # BuildRequires: julia julia-sundials julia-unitful julia-JSON @@ -107,11 +125,15 @@ Provides: %{name}-openmpi-static = %{version}-%{release} %endif %prep +%if %{?commit} +%autosetup -n %{name}-%{commit} -S git +%else %autosetup -S git +%endif # Do not build external libraries -# tclap and json -sed -i '/add_subdirectory(ext)/ d' CMakeLists.txt +# tclap and json and random123 +sed -i -e '/add_subdirectory(ext)/ d' -e 's/ ext-random123//' CMakeLists.txt # Remove ext folder rm -vrf ext # Disable doc build: we built it ourselves @@ -156,7 +178,11 @@ pushd build$MPI_COMPILE_TYPE && -DSHARE_INSTALL_PREFIX:PATH=%{_datadir} \\\ -DCMAKE_SKIP_RPATH:BOOL=ON \\\ -DCMAKE_BUILD_TYPE:STRING="release" \\\ +%ifarch x86_64 i686 aarch64 -DARB_VECTORIZE:BOOL=ON \\\ +%else + -DARB_VECTORIZE:BOOL=OFF \\\ +%endif -DARB_WITH_MPI:BOOL=$MPI_YES \\\ -DARB_WITH_GPU:BOOL=OFF \\\ -DARB_ARCH:STRING="native" \\\ @@ -287,8 +313,9 @@ popd %if %{with tests} %check # Run for serial only. our builders are not using MPI +# these tests segfault, filter out pushd build-serial - ./bin/unit + ./bin/unit --gtest_filter=-*mc_event_delivery*:*fvm_lowered*:*mc_cell_group* popd %endif @@ -343,6 +370,11 @@ popd %endif %changelog +* Sun Feb 23 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-5.20200223gitf12f934f365d9e68f01bfd857982be80da2ddd10 +- Build from latest upstream snapshot +- Freshen patch +- Add exclude arches + * Tue Jan 28 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 0.2.2-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild diff --git a/sources b/sources index 36af8fa..8aa8f1f 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -SHA512 (arbor-0.2.2.tar.gz) = 5da25d643ac607f94d157fd2506d3974e512328b9391d6b00f245a61142eaa8288722b798e2a497b62d74bccd891f90f7929356b384a7169c7533bba8792d6f6 +SHA512 (arbor-f12f934.tar.gz) = a08e192ab627939159862c597dd00267f7cfad9bf27e7eca674e9598ac758e9eda2a573bbb47ece839f5d8f9604551bf274f9ced873d98e9b93ffa3bc2efdaae

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Architecture specific change in rpms/Random123.git

by githook-noreply＠fedoraproject.org

The package rpms/Random123.git has added or updated architecture specific content in its spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s): https://src.fedoraproject.org/cgit/rpms/Random123.git/commit/?id=6cf404d4.... Change: +ExcludeArch: mips64r2 mips32r2 s390 s390x Thanks. Full change: ============ commit 6cf404d4f214205ad00801ec7e1af72f6ccfc213 Author: Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur(a)gmail.com> Date: Sun Feb 23 14:07:06 2020 +0000 Update to 1.13.2 diff --git a/.gitignore b/.gitignore index efe45c2..45b435b 100644 --- a/.gitignore +++ b/.gitignore @@ -1,2 +1,3 @@ /Random123-1.08.tar.gz /Random123-1.09.tar.gz +/Random123-1.13.2.tar.gz diff --git a/0001-add-missing-headers.patch b/0001-add-missing-headers.patch new file mode 100644 index 0000000..03539c8 --- /dev/null +++ b/0001-add-missing-headers.patch @@ -0,0 +1,11 @@ +diff -ur Random123-1.13.2.orig/include/Random123/uniform.hpp Random123-1.13.2/include/Random123/uniform.hpp +--- Random123-1.13.2.orig/include/Random123/uniform.hpp 2020-02-23 13:48:36.738627640 +0000 ++++ Random123-1.13.2/include/Random123/uniform.hpp 2020-02-23 13:48:59.490040126 +0000 +@@ -87,6 +87,7 @@ + + #include <Random123/features/compilerfeatures.h> + #include <limits> ++#include <cstddef> + #if R123_USE_CXX11_TYPE_TRAITS + #include <type_traits> + #endif diff --git a/Random123.spec b/Random123.spec index b2e1d5e..e3ab757 100644 --- a/Random123.spec +++ b/Random123.spec @@ -1,21 +1,23 @@ %global debug_package %{nil} Name: Random123 -Version: 1.09 -Release: 10%{?dist} +Version: 1.13.2 +Release: 1%{?dist} Summary: Library of random number generators License: BSD URL: http://www.deshawresearch.com/resources_random123.html Source0: http://www.deshawresearch.com/downloads/download_random123.cgi/%{name}-%{... -# works on aarch64 -# https://github.com/neuronsimulator/nrn/pull/115/files -Patch0: 0001-enable-arrch64.patch -# gccfeatures.h has a check that only permits building on x86 x86_64 and ppc -# I'd rather not remove the check -ExcludeArch: %{arm} mips64r2 mips32r2 s390 s390x +Patch0: 0001-add-missing-headers.patch + +# gccfeatures.h mentions what arches are supported +# these aren't on the list +ExcludeArch: mips64r2 mips32r2 s390 s390x BuildRequires: doxygen +# For tests +BuildRequires: gcc gcc-c++ +BuildRequires: patch %description Random123 is a library of "counter-based" random number generators (CBRNGs), in @@ -40,48 +42,16 @@ Summary: Development files for %{name} Provides: %{name} = %{version}-%{release} %description devel -Random123 is a library of "counter-based" random number generators (CBRNGs), in -which the Nth random number can be obtained by applying a stateless mixing -function to N instead of the conventional approach of using N iterations of a -stateful transformation. CBRNGs were originally developed for use in MD -applications on Anton, but they are ideal for a wide range of applications on -modern multi-core CPUs, GPUs, clusters, and special-purpose hardware. Three -families of non-cryptographic CBRNGs are described in a paper presented at the -SC11 conference: ARS (based on the Advanced Encryption System (AES)), Threefry -(based on the Threefish encryption function), and Philox (based on integer -multiplication). They all satisfy rigorous statistical testing (passing -BigCrush in TestU01), vectorize and parallelize well (each generator can -produce at least 264 independent streams), have long periods (the period of -each stream is at least 2128), require little or no memory or state, and have -excellent performance (a few clock cycles per byte of random output). The -Random123 library can be used with CPU (C and C++) and GPU (CUDA and OpenCL) -applications. +Development files for %{name}. %package doc Summary: Documentation for %{name}. %description doc -Documentation for %{name} - -Random123 is a library of "counter-based" random number generators (CBRNGs), in -which the Nth random number can be obtained by applying a stateless mixing -function to N instead of the conventional approach of using N iterations of a -stateful transformation. CBRNGs were originally developed for use in MD -applications on Anton, but they are ideal for a wide range of applications on -modern multi-core CPUs, GPUs, clusters, and special-purpose hardware. Three -families of non-cryptographic CBRNGs are described in a paper presented at the -SC11 conference: ARS (based on the Advanced Encryption System (AES)), Threefry -(based on the Threefish encryption function), and Philox (based on integer -multiplication). They all satisfy rigorous statistical testing (passing -BigCrush in TestU01), vectorize and parallelize well (each generator can -produce at least 264 independent streams), have long periods (the period of -each stream is at least 2128), require little or no memory or state, and have -excellent performance (a few clock cycles per byte of random output). The -Random123 library can be used with CPU (C and C++) and GPU (CUDA and OpenCL) -applications. +Documentation for %{name}. %prep -%autosetup -p1 -S patch +%autosetup -S patch -p1 %build @@ -90,14 +60,17 @@ pushd docs doxygen Doxyfile popd -# Wrong file end of line encoding -sed -i 's/\r$//' examples/BUILDVC11.BAT -sed -i 's/\r$//' examples/BUILDVC.BAT - %install mkdir -p -m 0755 $RPM_BUILD_ROOT/%{_includedir}/%{name}/ cp -a include/Random123/* $RPM_BUILD_ROOT/%{_includedir}/%{name}/ +%check +pushd tests + cp GNUmakefile Makefile + %set_build_flags + make +popd + %files devel %license LICENSE %{_includedir}/%{name}/ @@ -106,6 +79,12 @@ cp -a include/Random123/* $RPM_BUILD_ROOT/%{_includedir}/%{name}/ %doc examples %changelog +* Sun Feb 23 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.13.2-1 +- Update to latest release +- Run new tests +- Update arches supported +- Drop unneeded patch + * Tue Jan 28 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 1.09-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild diff --git a/sources b/sources index 21fe081..e8970c1 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -67ae45ff94b12acea590a6aa04ed1123 Random123-1.09.tar.gz +SHA512 (Random123-1.13.2.tar.gz) = 543ed679911177c2da00b920c376abc8c5f4496c9a6a4ed823c295f5222e370bc2b8c9c5b63e93ae507252999eecfc112ae3203a2a82f9deb8747a9f9d387b18 commit e136b36133e0284b5bb7e51e6841ab1a25898acd Author: Fedora Release Engineering <releng(a)fedoraproject.org> Date: Tue Jan 28 10:53:32 2020 +0000 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild Signed-off-by: Fedora Release Engineering <releng(a)fedoraproject.org> diff --git a/Random123.spec b/Random123.spec index 8b839e1..b2e1d5e 100644 --- a/Random123.spec +++ b/Random123.spec @@ -2,7 +2,7 @@ Name: Random123 Version: 1.09 -Release: 9%{?dist} +Release: 10%{?dist} Summary: Library of random number generators License: BSD @@ -106,6 +106,9 @@ cp -a include/Random123/* $RPM_BUILD_ROOT/%{_includedir}/%{name}/ %doc examples %changelog +* Tue Jan 28 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 1.09-10 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild + * Wed Jul 24 2019 Fedora Release Engineering <releng(a)fedoraproject.org> - 1.09-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild

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Architecture specific change in rpms/Random123.git

by githook-noreply＠fedoraproject.org

The package rpms/Random123.git has added or updated architecture specific content in its spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s): https://src.fedoraproject.org/cgit/rpms/Random123.git/commit/?id=6cf404d4.... Change: +ExcludeArch: mips64r2 mips32r2 s390 s390x Thanks. Full change: ============ commit 6cf404d4f214205ad00801ec7e1af72f6ccfc213 Author: Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur(a)gmail.com> Date: Sun Feb 23 14:07:06 2020 +0000 Update to 1.13.2 diff --git a/.gitignore b/.gitignore index efe45c2..45b435b 100644 --- a/.gitignore +++ b/.gitignore @@ -1,2 +1,3 @@ /Random123-1.08.tar.gz /Random123-1.09.tar.gz +/Random123-1.13.2.tar.gz diff --git a/0001-add-missing-headers.patch b/0001-add-missing-headers.patch new file mode 100644 index 0000000..03539c8 --- /dev/null +++ b/0001-add-missing-headers.patch @@ -0,0 +1,11 @@ +diff -ur Random123-1.13.2.orig/include/Random123/uniform.hpp Random123-1.13.2/include/Random123/uniform.hpp +--- Random123-1.13.2.orig/include/Random123/uniform.hpp 2020-02-23 13:48:36.738627640 +0000 ++++ Random123-1.13.2/include/Random123/uniform.hpp 2020-02-23 13:48:59.490040126 +0000 +@@ -87,6 +87,7 @@ + + #include <Random123/features/compilerfeatures.h> + #include <limits> ++#include <cstddef> + #if R123_USE_CXX11_TYPE_TRAITS + #include <type_traits> + #endif diff --git a/Random123.spec b/Random123.spec index b2e1d5e..e3ab757 100644 --- a/Random123.spec +++ b/Random123.spec @@ -1,21 +1,23 @@ %global debug_package %{nil} Name: Random123 -Version: 1.09 -Release: 10%{?dist} +Version: 1.13.2 +Release: 1%{?dist} Summary: Library of random number generators License: BSD URL: http://www.deshawresearch.com/resources_random123.html Source0: http://www.deshawresearch.com/downloads/download_random123.cgi/%{name}-%{... -# works on aarch64 -# https://github.com/neuronsimulator/nrn/pull/115/files -Patch0: 0001-enable-arrch64.patch -# gccfeatures.h has a check that only permits building on x86 x86_64 and ppc -# I'd rather not remove the check -ExcludeArch: %{arm} mips64r2 mips32r2 s390 s390x +Patch0: 0001-add-missing-headers.patch + +# gccfeatures.h mentions what arches are supported +# these aren't on the list +ExcludeArch: mips64r2 mips32r2 s390 s390x BuildRequires: doxygen +# For tests +BuildRequires: gcc gcc-c++ +BuildRequires: patch %description Random123 is a library of "counter-based" random number generators (CBRNGs), in @@ -40,48 +42,16 @@ Summary: Development files for %{name} Provides: %{name} = %{version}-%{release} %description devel -Random123 is a library of "counter-based" random number generators (CBRNGs), in -which the Nth random number can be obtained by applying a stateless mixing -function to N instead of the conventional approach of using N iterations of a -stateful transformation. CBRNGs were originally developed for use in MD -applications on Anton, but they are ideal for a wide range of applications on -modern multi-core CPUs, GPUs, clusters, and special-purpose hardware. Three -families of non-cryptographic CBRNGs are described in a paper presented at the -SC11 conference: ARS (based on the Advanced Encryption System (AES)), Threefry -(based on the Threefish encryption function), and Philox (based on integer -multiplication). They all satisfy rigorous statistical testing (passing -BigCrush in TestU01), vectorize and parallelize well (each generator can -produce at least 264 independent streams), have long periods (the period of -each stream is at least 2128), require little or no memory or state, and have -excellent performance (a few clock cycles per byte of random output). The -Random123 library can be used with CPU (C and C++) and GPU (CUDA and OpenCL) -applications. +Development files for %{name}. %package doc Summary: Documentation for %{name}. %description doc -Documentation for %{name} - -Random123 is a library of "counter-based" random number generators (CBRNGs), in -which the Nth random number can be obtained by applying a stateless mixing -function to N instead of the conventional approach of using N iterations of a -stateful transformation. CBRNGs were originally developed for use in MD -applications on Anton, but they are ideal for a wide range of applications on -modern multi-core CPUs, GPUs, clusters, and special-purpose hardware. Three -families of non-cryptographic CBRNGs are described in a paper presented at the -SC11 conference: ARS (based on the Advanced Encryption System (AES)), Threefry -(based on the Threefish encryption function), and Philox (based on integer -multiplication). They all satisfy rigorous statistical testing (passing -BigCrush in TestU01), vectorize and parallelize well (each generator can -produce at least 264 independent streams), have long periods (the period of -each stream is at least 2128), require little or no memory or state, and have -excellent performance (a few clock cycles per byte of random output). The -Random123 library can be used with CPU (C and C++) and GPU (CUDA and OpenCL) -applications. +Documentation for %{name}. %prep -%autosetup -p1 -S patch +%autosetup -S patch -p1 %build @@ -90,14 +60,17 @@ pushd docs doxygen Doxyfile popd -# Wrong file end of line encoding -sed -i 's/\r$//' examples/BUILDVC11.BAT -sed -i 's/\r$//' examples/BUILDVC.BAT - %install mkdir -p -m 0755 $RPM_BUILD_ROOT/%{_includedir}/%{name}/ cp -a include/Random123/* $RPM_BUILD_ROOT/%{_includedir}/%{name}/ +%check +pushd tests + cp GNUmakefile Makefile + %set_build_flags + make +popd + %files devel %license LICENSE %{_includedir}/%{name}/ @@ -106,6 +79,12 @@ cp -a include/Random123/* $RPM_BUILD_ROOT/%{_includedir}/%{name}/ %doc examples %changelog +* Sun Feb 23 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.13.2-1 +- Update to latest release +- Run new tests +- Update arches supported +- Drop unneeded patch + * Tue Jan 28 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 1.09-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild diff --git a/sources b/sources index 21fe081..e8970c1 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -67ae45ff94b12acea590a6aa04ed1123 Random123-1.09.tar.gz +SHA512 (Random123-1.13.2.tar.gz) = 543ed679911177c2da00b920c376abc8c5f4496c9a6a4ed823c295f5222e370bc2b8c9c5b63e93ae507252999eecfc112ae3203a2a82f9deb8747a9f9d387b18

4 years, 2 months

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Architecture specific change in rpms/Random123.git

by githook-noreply＠fedoraproject.org

The package rpms/Random123.git has added or updated architecture specific content in its spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s): https://src.fedoraproject.org/cgit/rpms/Random123.git/commit/?id=6cf404d4.... Change: +ExcludeArch: mips64r2 mips32r2 s390 s390x Thanks. Full change: ============ commit 6cf404d4f214205ad00801ec7e1af72f6ccfc213 Author: Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur(a)gmail.com> Date: Sun Feb 23 14:07:06 2020 +0000 Update to 1.13.2 diff --git a/.gitignore b/.gitignore index efe45c2..45b435b 100644 --- a/.gitignore +++ b/.gitignore @@ -1,2 +1,3 @@ /Random123-1.08.tar.gz /Random123-1.09.tar.gz +/Random123-1.13.2.tar.gz diff --git a/0001-add-missing-headers.patch b/0001-add-missing-headers.patch new file mode 100644 index 0000000..03539c8 --- /dev/null +++ b/0001-add-missing-headers.patch @@ -0,0 +1,11 @@ +diff -ur Random123-1.13.2.orig/include/Random123/uniform.hpp Random123-1.13.2/include/Random123/uniform.hpp +--- Random123-1.13.2.orig/include/Random123/uniform.hpp 2020-02-23 13:48:36.738627640 +0000 ++++ Random123-1.13.2/include/Random123/uniform.hpp 2020-02-23 13:48:59.490040126 +0000 +@@ -87,6 +87,7 @@ + + #include <Random123/features/compilerfeatures.h> + #include <limits> ++#include <cstddef> + #if R123_USE_CXX11_TYPE_TRAITS + #include <type_traits> + #endif diff --git a/Random123.spec b/Random123.spec index b2e1d5e..e3ab757 100644 --- a/Random123.spec +++ b/Random123.spec @@ -1,21 +1,23 @@ %global debug_package %{nil} Name: Random123 -Version: 1.09 -Release: 10%{?dist} +Version: 1.13.2 +Release: 1%{?dist} Summary: Library of random number generators License: BSD URL: http://www.deshawresearch.com/resources_random123.html Source0: http://www.deshawresearch.com/downloads/download_random123.cgi/%{name}-%{... -# works on aarch64 -# https://github.com/neuronsimulator/nrn/pull/115/files -Patch0: 0001-enable-arrch64.patch -# gccfeatures.h has a check that only permits building on x86 x86_64 and ppc -# I'd rather not remove the check -ExcludeArch: %{arm} mips64r2 mips32r2 s390 s390x +Patch0: 0001-add-missing-headers.patch + +# gccfeatures.h mentions what arches are supported +# these aren't on the list +ExcludeArch: mips64r2 mips32r2 s390 s390x BuildRequires: doxygen +# For tests +BuildRequires: gcc gcc-c++ +BuildRequires: patch %description Random123 is a library of "counter-based" random number generators (CBRNGs), in @@ -40,48 +42,16 @@ Summary: Development files for %{name} Provides: %{name} = %{version}-%{release} %description devel -Random123 is a library of "counter-based" random number generators (CBRNGs), in -which the Nth random number can be obtained by applying a stateless mixing -function to N instead of the conventional approach of using N iterations of a -stateful transformation. CBRNGs were originally developed for use in MD -applications on Anton, but they are ideal for a wide range of applications on -modern multi-core CPUs, GPUs, clusters, and special-purpose hardware. Three -families of non-cryptographic CBRNGs are described in a paper presented at the -SC11 conference: ARS (based on the Advanced Encryption System (AES)), Threefry -(based on the Threefish encryption function), and Philox (based on integer -multiplication). They all satisfy rigorous statistical testing (passing -BigCrush in TestU01), vectorize and parallelize well (each generator can -produce at least 264 independent streams), have long periods (the period of -each stream is at least 2128), require little or no memory or state, and have -excellent performance (a few clock cycles per byte of random output). The -Random123 library can be used with CPU (C and C++) and GPU (CUDA and OpenCL) -applications. +Development files for %{name}. %package doc Summary: Documentation for %{name}. %description doc -Documentation for %{name} - -Random123 is a library of "counter-based" random number generators (CBRNGs), in -which the Nth random number can be obtained by applying a stateless mixing -function to N instead of the conventional approach of using N iterations of a -stateful transformation. CBRNGs were originally developed for use in MD -applications on Anton, but they are ideal for a wide range of applications on -modern multi-core CPUs, GPUs, clusters, and special-purpose hardware. Three -families of non-cryptographic CBRNGs are described in a paper presented at the -SC11 conference: ARS (based on the Advanced Encryption System (AES)), Threefry -(based on the Threefish encryption function), and Philox (based on integer -multiplication). They all satisfy rigorous statistical testing (passing -BigCrush in TestU01), vectorize and parallelize well (each generator can -produce at least 264 independent streams), have long periods (the period of -each stream is at least 2128), require little or no memory or state, and have -excellent performance (a few clock cycles per byte of random output). The -Random123 library can be used with CPU (C and C++) and GPU (CUDA and OpenCL) -applications. +Documentation for %{name}. %prep -%autosetup -p1 -S patch +%autosetup -S patch -p1 %build @@ -90,14 +60,17 @@ pushd docs doxygen Doxyfile popd -# Wrong file end of line encoding -sed -i 's/\r$//' examples/BUILDVC11.BAT -sed -i 's/\r$//' examples/BUILDVC.BAT - %install mkdir -p -m 0755 $RPM_BUILD_ROOT/%{_includedir}/%{name}/ cp -a include/Random123/* $RPM_BUILD_ROOT/%{_includedir}/%{name}/ +%check +pushd tests + cp GNUmakefile Makefile + %set_build_flags + make +popd + %files devel %license LICENSE %{_includedir}/%{name}/ @@ -106,6 +79,12 @@ cp -a include/Random123/* $RPM_BUILD_ROOT/%{_includedir}/%{name}/ %doc examples %changelog +* Sun Feb 23 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.13.2-1 +- Update to latest release +- Run new tests +- Update arches supported +- Drop unneeded patch + * Tue Jan 28 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 1.09-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild diff --git a/sources b/sources index 21fe081..e8970c1 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -67ae45ff94b12acea590a6aa04ed1123 Random123-1.09.tar.gz +SHA512 (Random123-1.13.2.tar.gz) = 543ed679911177c2da00b920c376abc8c5f4496c9a6a4ed823c295f5222e370bc2b8c9c5b63e93ae507252999eecfc112ae3203a2a82f9deb8747a9f9d387b18

4 years, 2 months

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Architecture specific change in rpms/gromacs.git

by githook-noreply＠fedoraproject.org

The package rpms/gromacs.git has added or updated architecture specific content in its spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s): https://src.fedoraproject.org/cgit/rpms/gromacs.git/commit/?id=6e9b7a9178.... Change: -%ifarch ppc64le Thanks. Full change: ============ commit 6e9b7a9178ad32d1a783c81b047edb2d90489e4f Author: Christoph Junghans <junghans(a)votca.org> Date: Sun Feb 23 06:56:13 2020 -0700 fix build with gcc10 diff --git a/gromacs.spec b/gromacs.spec index 7e39cc7..0df63c1 100644 --- a/gromacs.spec +++ b/gromacs.spec @@ -18,9 +18,10 @@ %ifarch ppc64p7 %global simd IBM_VMX %endif -%ifarch ppc64le -%global simd IBM_VSX -%endif +# https://bugzilla.redhat.com/show_bug.cgi?id=1799473#c4 +#ifarch ppc64le +#global simd IBM_VSX +#endif %ifarch armv7hnl %global simd ARM_NEON %endif @@ -30,7 +31,7 @@ Name: gromacs Version: 2019.5 -Release: 2%{?dist}.1 +Release: 3%{?dist} Summary: Fast, Free and Flexible Molecular Dynamics License: GPLv2+ URL: http://www.gromacs.org @@ -357,6 +358,9 @@ done %{_libdir}/mpich/bin/mdrun_mpich* %changelog +* Sat Feb 15 2020 Christoph Junghans <junghans(a)votca.org> - 2019.5-3 +- fix build with gcc10 + * Wed Jan 29 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 2019.5-2.1 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild

4 years, 2 months

1
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Architecture specific change in rpms/gromacs.git

by githook-noreply＠fedoraproject.org

The package rpms/gromacs.git has added or updated architecture specific content in its spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s): https://src.fedoraproject.org/cgit/rpms/gromacs.git/commit/?id=6e9b7a9178.... Change: -%ifarch ppc64le Thanks. Full change: ============ commit 6e9b7a9178ad32d1a783c81b047edb2d90489e4f Author: Christoph Junghans <junghans(a)votca.org> Date: Sun Feb 23 06:56:13 2020 -0700 fix build with gcc10 diff --git a/gromacs.spec b/gromacs.spec index 7e39cc7..0df63c1 100644 --- a/gromacs.spec +++ b/gromacs.spec @@ -18,9 +18,10 @@ %ifarch ppc64p7 %global simd IBM_VMX %endif -%ifarch ppc64le -%global simd IBM_VSX -%endif +# https://bugzilla.redhat.com/show_bug.cgi?id=1799473#c4 +#ifarch ppc64le +#global simd IBM_VSX +#endif %ifarch armv7hnl %global simd ARM_NEON %endif @@ -30,7 +31,7 @@ Name: gromacs Version: 2019.5 -Release: 2%{?dist}.1 +Release: 3%{?dist} Summary: Fast, Free and Flexible Molecular Dynamics License: GPLv2+ URL: http://www.gromacs.org @@ -357,6 +358,9 @@ done %{_libdir}/mpich/bin/mdrun_mpich* %changelog +* Sat Feb 15 2020 Christoph Junghans <junghans(a)votca.org> - 2019.5-3 +- fix build with gcc10 + * Wed Jan 29 2020 Fedora Release Engineering <releng(a)fedoraproject.org> - 2019.5-2.1 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild

4 years, 2 months

1
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Architecture specific change in rpms/asv.git

by githook-noreply＠fedoraproject.org

The package rpms/asv.git has added or updated architecture specific content in its spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s): https://src.fedoraproject.org/cgit/rpms/asv.git/commit/?id=420922d0e37bd6.... Change: +%ifarch x86_64 aarch64 Thanks. Full change: ============ commit 420922d0e37bd6d603b364d9dc1f7867832cd3cd Author: Elliott Sales de Andrade <quantum.analyst(a)gmail.com> Date: Sun Feb 23 02:47:08 2020 -0500 Skip web tests on i686 too. diff --git a/asv.spec b/asv.spec index 8615780..9da2421 100644 --- a/asv.spec +++ b/asv.spec @@ -137,7 +137,7 @@ popd # Must do this to load from buildroot rm -rf asv -%ifarch x86_64 i686 aarch64 +%ifarch x86_64 aarch64 WEBDRIVER="--webdriver=ChromeHeadless" %endif PYTHONPATH=%{buildroot}%{python3_sitearch} PYTHONDONTWRITEBYTECODE=1 \

4 years, 2 months

1
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Architecture specific change in rpms/asv.git

by githook-noreply＠fedoraproject.org

The package rpms/asv.git has added or updated architecture specific content in its spec file (ExclusiveArch/ExcludeArch or %ifarch/%ifnarch) in commit(s): https://src.fedoraproject.org/cgit/rpms/asv.git/commit/?id=420922d0e37bd6.... Change: +%ifarch x86_64 aarch64 Thanks. Full change: ============ commit 420922d0e37bd6d603b364d9dc1f7867832cd3cd Author: Elliott Sales de Andrade <quantum.analyst(a)gmail.com> Date: Sun Feb 23 02:47:08 2020 -0500 Skip web tests on i686 too. diff --git a/asv.spec b/asv.spec index 8615780..9da2421 100644 --- a/asv.spec +++ b/asv.spec @@ -137,7 +137,7 @@ popd # Must do this to load from buildroot rm -rf asv -%ifarch x86_64 i686 aarch64 +%ifarch x86_64 aarch64 WEBDRIVER="--webdriver=ChromeHeadless" %endif PYTHONPATH=%{buildroot}%{python3_sitearch} PYTHONDONTWRITEBYTECODE=1 \

4 years, 2 months

1
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