2:09 p.m.
I hope it's just me...
but I was very dismayed to find that today's F13 update (which pulled
in a lot of changes) hosed my laptop. It removed almost everything
from /boot, and removed or emptied /sbin, /bin, /usr/sbin and /usr/bin.
It removed nearly everything from /lib and /usr/lib.
I suspect that it removed everything yum-owned, since the few remaining
files (at least the shift-jis ones) are ones I put there manually:
$ find lib usr/lib -type f
usr/lib/gcj-4.4.3/classmap.db
usr/lib/graphviz/config6
usr/lib/gio/modules/giomodule.cache
usr/lib/locale/ja_JP.SHIFT_JIS/LC_MEASUREMENT
usr/lib/locale/ja_JP.SHIFT_JIS/LC_COLLATE
usr/lib/locale/ja_JP.SHIFT_JIS/LC_PAPER
usr/lib/locale/ja_JP.SHIFT_JIS/LC_MONETARY
usr/lib/locale/ja_JP.SHIFT_JIS/LC_IDENTIFICATION
usr/lib/locale/ja_JP.SHIFT_JIS/LC_NAME
usr/lib/locale/ja_JP.SHIFT_JIS/LC_ADDRESS
usr/lib/locale/ja_JP.SHIFT_JIS/LC_TELEPHONE
usr/lib/locale/ja_JP.SHIFT_JIS/LC_MESSAGES/SYS_LC_MESSAGES
usr/lib/locale/ja_JP.SHIFT_JIS/LC_TIME
usr/lib/locale/ja_JP.SHIFT_JIS/LC_NUMERIC
usr/lib/locale/ja_JP.SHIFT_JIS/LC_CTYPE
usr/lib/locale/locale-archive
usr/lib/ghc-6.12.1/package.conf.d/package.cache.rpmsave
usr/lib/security/classpath.security.rpmsave
What happened?
I started the "yum -y update", and didn't hang around to watch everything.
When I came back, the text displayed in all terminals was in a completely
illegible all-rectangles font, but emacs was ok (I'd installed it myself).
However, I couldn't start a shell from emacs (no surprise, now that I
know /bin was removed). Maybe yum actually told me it was going to
remove everything and if I'd been watching I could have stopped it.
I don't know.
Naively I figured reboot had a chance of helping.
Wrong. Booting failed with "no file", since /boot was
nearly empty. It still had menu.lst, with one entry,
but no kernel.
FYI, in case the details of my setup are relevant,
that installation was using a GPT partition table
with /boot on its own partition, and "/" (encrypted) in another.
The initial installation was from an F13 nightly of a month or
so ago and I had been updating pretty regularly.
This is my excuse to reinstall with a newer image.
I'm still poking around as I write this, and see that
the most recently modified file in /var/log is yum.log.
Here are today's entries:
[after that, I've included part of /var/log/messages
that shows cpuspeed might have a recursive lock problem.]
Apr 22 12:15:20 Updated: kernel-headers-2.6.33.2-57.fc13.i686
Apr 22 12:15:21 Updated: 1:autocorr-en-3.2.0-12.16.fc13.noarch
Apr 22 12:15:21 Updated: foomatic-db-filesystem-4.0-14.20100204.fc13.noarch
Apr 22 12:15:25 Updated: tzdata-java-2010i-1.fc13.noarch
Apr 22 12:15:26 Updated: comps-extras-19-1.fc13.noarch
Apr 22 12:15:36 Updated: tzdata-2010i-1.fc13.noarch
Apr 22 12:15:38 Erased: anaconda
Apr 22 12:16:34 Erased: evolution
Apr 22 12:16:55 Erased: rhythmbox
Apr 22 12:17:03 Erased: empathy
Apr 22 12:17:06 Erased: inkscape
Apr 22 12:17:13 Erased: gnote
Apr 22 12:17:21 Erased: gnome-power-manager
Apr 22 12:17:23 Erased: fedora-screensaver-theme
Apr 22 12:17:28 Erased: gnome-screensaver
Apr 22 12:17:36 Erased: NetworkManager-gnome
Apr 22 12:17:39 Erased: sssd
Apr 22 12:17:47 Erased: gnome-color-manager
Apr 22 12:18:11 Erased: planner
Apr 22 12:18:25 Erased: gnome-packagekit
Apr 22 12:18:33 Erased: emacs
Apr 22 12:18:41 Erased: gnome-applets
Apr 22 12:18:54 Erased: gnome-panel
Apr 22 12:19:01 Erased: gnome-pilot
Apr 22 12:19:07 Erased: vinagre
Apr 22 12:19:20 Erased: gnome-games
Apr 22 12:19:27 Erased: gnome-system-monitor
Apr 22 12:19:29 Erased: setroubleshoot
Apr 22 12:19:48 Erased: gnome-utils
Apr 22 12:19:54 Erased: mousetweaks
Apr 22 12:20:00 Erased: yelp
Apr 22 12:20:08 Erased: gedit
Apr 22 12:20:10 Erased: graphviz
Apr 22 12:20:12 Erased: NetworkManager-pptp
Apr 22 12:20:23 Erased: compiz-gnome
Apr 22 12:20:25 Erased: NetworkManager-openvpn
Apr 22 12:20:27 Erased: cheese
Apr 22 12:20:29 Erased: compiz
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Apr 22 12:20:32 Erased: gnome-python2-libegg
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Apr 22 12:51:28 Erased: nomarch
Apr 22 12:51:28 Erased: libdv
Apr 22 12:51:29 Erased: wavpack
Apr 22 12:51:30 Erased: libdhash
Apr 22 12:51:31 Erased: gsl
Apr 22 12:51:31 Erased: makebootfat
Apr 22 12:51:32 Erased: strace
Apr 22 12:51:33 Erased: traceroute
Apr 22 12:51:34 Erased: pam_smb
Apr 22 12:51:34 Erased: symlinks
Apr 22 12:51:35 Erased: vconfig
Apr 22 12:51:36 Erased: ntfs-3g
Apr 22 12:51:37 Erased: tree
Apr 22 12:51:38 Erased: pv
Apr 22 12:51:39 Erased: lrzsz
Apr 22 12:51:39 Erased: rdate
Apr 22 12:51:40 Erased: jhead
Apr 22 12:51:40 Erased: mmv
Apr 22 12:51:41 Erased: b43-fwcutter
Apr 22 12:51:42 Erased: cppi
Apr 22 12:51:42 Erased: bridge-utils
Apr 22 12:51:43 Erased: finger
Apr 22 12:51:43 Erased: rdist
Apr 22 12:51:44 Erased: setserial
Apr 22 12:51:45 Erased: ethtool
Apr 22 12:51:45 Erased: diffstat
Apr 22 12:51:46 Erased: sinjdoc
Apr 22 12:51:47 Erased: java-1.5.0-gcj
Apr 22 12:51:50 Erased: texlive-texmf-fonts
Apr 22 12:51:53 Erased: xorg-x11-server-common
Apr 22 12:51:53 Erased: texlive-texmf-dvips
Apr 22 12:51:55 Erased: ghostscript-fonts
Apr 22 12:51:58 Erased: perl-Digest-HMAC
Apr 22 12:51:58 Erased: rhino
Apr 22 12:51:59 Erased: jline
Apr 22 12:52:00 Erased: fedora-gnome-theme
Apr 22 12:52:00 Erased: fedora-icon-theme
Apr 22 12:52:02 Erased: gnome-themes
Apr 22 12:52:05 Erased: gnome-icon-theme
Apr 22 12:52:06 Erased: jpackage-utils
Apr 22 12:52:07 Erased: texlive-texmf
Apr 22 12:52:09 Erased: fedora-logos
Apr 22 12:52:10 Erased: urw-fonts
Apr 22 12:52:13 Erased: redhat-menus
Apr 22 12:52:13 Erased: dejavu-sans-fonts
Apr 22 12:52:16 Erased: dejavu-sans-mono-fonts
Apr 22 12:52:19 Erased: dejavu-serif-fonts
Apr 22 12:52:22 Erased: liberation-mono-fonts
Apr 22 12:52:25 Erased: liberation-sans-fonts
Apr 22 12:52:28 Erased: liberation-serif-fonts
Apr 22 12:52:31 Erased: openoffice.org-opensymbol-fonts
Apr 22 12:52:33 Erased: gnome-python2
Apr 22 12:52:34 Erased: sound-theme-freedesktop
Apr 22 12:52:34 Erased: polkit-desktop-policy
Apr 22 12:52:35 Erased: liberation-fonts-common
Apr 22 12:52:35 Erased: dejavu-fonts-common
Apr 22 12:52:36 Erased: java_cup
Apr 22 12:52:37 Erased: plymouth-scripts
Apr 22 12:52:37 Erased: linux-firmware
Apr 22 12:52:38 Erased: hunspell-en
Apr 22 12:52:39 Erased: hyphen-en
Apr 22 12:52:39 Erased: constantine-backgrounds
Apr 22 12:52:40 Erased: constantine-backgrounds-single
Apr 22 12:52:40 Erased: fontpackages-filesystem
Apr 22 12:52:41 Erased: texlive-texmf-errata
Apr 22 12:52:41 Erased: texlive-texmf-errata-dvips
Apr 22 12:52:42 Erased: xkeyboard-config
Apr 22 12:52:43 Erased: texlive-texmf-errata-fonts
Apr 22 12:52:43 Erased: hal-filesystem
Apr 22 12:52:43 Erased: poppler-data
Apr 22 12:52:45 Erased: xml-common
Apr 22 12:52:46 Erased: control-center-filesystem
Apr 22 12:52:46 Erased: libgcj
Apr 22 12:52:48 Erased: pygtk2
Apr 22 12:52:49 Erased: notification-daemon-engine-slider
Apr 22 12:52:50 Erased: notification-daemon
Apr 22 12:52:51 Erased: libwnck
Apr 22 12:52:52 Erased: GConf2
Apr 22 12:52:53 Erased: gtk2-engines
Apr 22 12:52:55 Erased: gtk2
Apr 22 12:52:56 Erased: cups-libs
Apr 22 12:52:57 Erased: pango
Apr 22 12:52:58 Erased: avahi
Apr 22 12:52:59 Erased: iputils
Apr 22 12:53:00 Erased: udev
Apr 22 12:53:01 Erased: initscripts
Apr 22 12:53:03 Erased: util-linux-ng
Apr 22 12:53:04 Erased: ConsoleKit
Apr 22 12:53:05 Erased: polkit
Apr 22 12:53:07 Erased: xorg-x11-font-utils
Apr 22 12:53:08 Erased: libXft
Apr 22 12:53:08 Erased: gnutls
Apr 22 12:53:09 Erased: startup-notification
Apr 22 12:53:10 Erased: ConsoleKit-libs
Apr 22 12:53:11 Erased: dbus
Apr 22 12:53:11 Erased: libtiff
Apr 22 12:53:12 Erased: openldap
Apr 22 12:53:13 Erased: hunspell
Apr 22 12:53:14 Erased: libXfont
Apr 22 12:53:15 Erased: iproute
Apr 22 12:53:16 Erased: upstart
Apr 22 12:53:17 Erased: MAKEDEV
Apr 22 12:53:17 Erased: libXcursor
Apr 22 12:53:18 Erased: pygobject2
Apr 22 12:53:19 Erased: shadow-utils
Apr 22 12:53:20 Erased: libSM
Apr 22 12:53:21 Erased: xcb-util
Apr 22 12:53:22 Erased: eggdbus
Apr 22 12:53:22 Erased: dbus-glib
Apr 22 12:53:23 Erased: findutils
Apr 22 12:53:24 Erased: sed
Apr 22 12:53:25 Erased: libusb
Apr 22 12:53:26 Erased: libXcomposite
Apr 22 12:53:26 Erased: libXrandr
Apr 22 12:53:27 Erased: ORBit2
Apr 22 12:53:28 Erased: pycairo
Apr 22 12:53:29 Erased: python-libs
Apr 22 12:53:30 Erased: python
Apr 22 12:53:31 Erased: openssl
Apr 22 12:53:32 Erased: cairo
Apr 22 12:53:33 Erased: fontconfig
Apr 22 12:53:34 Erased: krb5-libs
Apr 22 12:53:35 Erased: libXtst
Apr 22 12:53:36 Erased: libXi
Apr 22 12:53:36 Erased: libnih
Apr 22 12:53:37 Erased: iptables
Apr 22 12:53:38 Erased: libblkid
Apr 22 12:53:39 Erased: psmisc
Apr 22 12:53:39 Erased: net-tools
Apr 22 12:53:40 Erased: libXdamage
Apr 22 12:53:41 Erased: libXinerama
Apr 22 12:53:41 Erased: libXres
Apr 22 12:53:42 Erased: xorg-x11-xkb-utils
Apr 22 12:53:43 Erased: libxkbfile
Apr 22 12:53:43 Erased: libXext
Apr 22 12:53:44 Erased: libXfixes
Apr 22 12:53:44 Erased: libXrender
Apr 22 12:53:45 Erased: libX11
Apr 22 12:53:46 Erased: libxcb
Apr 22 12:53:46 Erased: libpng
Apr 22 12:53:47 Erased: sqlite
Apr 22 12:53:48 Erased: readline
Apr 22 12:53:49 Erased: libIDL
Apr 22 12:53:49 Erased: libfontenc
Apr 22 12:53:50 Erased: cyrus-sasl-lib
Apr 22 12:53:51 Erased: libgcrypt
Apr 22 12:53:52 Erased: gawk
Apr 22 12:53:53 Erased: procps
Apr 22 12:53:54 Erased: cpio
Apr 22 12:53:55 Erased: libidn
Apr 22 12:53:56 Erased: atk
Apr 22 12:53:56 Erased: jasper-libs
Apr 22 12:53:57 Erased: libxml2
Apr 22 12:53:58 Erased: alsa-lib
Apr 22 12:53:59 Erased: desktop-file-utils
Apr 22 12:54:00 Erased: gamin
Apr 22 12:54:01 Erased: glib2
Apr 22 12:54:02 Erased: perl-Digest-SHA1
Apr 22 12:54:03 Erased: perl-Module-Pluggable
Apr 22 12:54:04 Erased: perl-Pod-Escapes
Apr 22 12:54:04 Erased: perl-Pod-Simple
Apr 22 12:54:05 Erased: perl-version
Apr 22 12:54:06 Erased: perl-libs
Apr 22 12:54:07 Erased: perl
Apr 22 12:54:09 Erased: freetype
Apr 22 12:54:10 Erased: gdbm
Apr 22 12:54:10 Erased: libjpeg
Apr 22 12:54:11 Erased: libgpg-error
Apr 22 12:54:12 Erased: libXau
Apr 22 12:54:12 Erased: hostname
Apr 22 12:54:13 Erased: libuuid
Apr 22 12:54:14 Erased: dbus-libs
Apr 22 12:54:14 Erased: libcom_err
Apr 22 12:54:15 Erased: keyutils-libs
Apr 22 12:54:15 Erased: expat
Apr 22 12:54:16 Erased: pixman
Apr 22 12:54:16 Erased: bzip2-libs
Apr 22 12:54:17 Erased: libffi
Apr 22 12:54:17 Erased: libICE
Apr 22 12:54:18 Erased: linux-atm-libs
Apr 22 12:54:18 Erased: libcap-ng
Apr 22 12:54:19 Erased: libtasn1
Apr 22 12:54:19 Erased: pkgconfig
Apr 22 12:54:20 Erased: sysvinit-tools
Apr 22 12:54:21 Erased: mingetty
Apr 22 12:54:21 Erased: libdaemon
Apr 22 12:54:22 Erased: libthai
Apr 22 12:54:23 Erased: libart_lgpl
Apr 22 12:54:23 Erased: zip
Apr 22 12:54:24 Erased: hyphen
Apr 22 12:54:25 Erased: hicolor-icon-theme
Apr 22 12:54:25 Erased: sgml-common
Apr 22 12:54:26 Erased: hwdata
Apr 22 12:54:27 Erased: libX11-common
Apr 22 12:54:28 Erased: ca-certificates
Apr 22 12:54:28 Erased: dmz-cursor-themes
Apr 22 12:54:29 Erased: fedora-release
Apr 22 12:54:30 Erased: module-init-tools
Apr 22 12:54:31 Erased: coreutils-libs
Apr 22 12:54:31 Erased: cracklib-dicts
Apr 22 12:54:32 Erased: gzip
Apr 22 12:54:32 Erased: cracklib
Apr 22 12:54:33 Erased: pam
Apr 22 12:54:35 Erased: coreutils
Apr 22 12:54:37 Erased: gmp
Apr 22 12:54:38 Erased: grep
Apr 22 12:54:39 Erased: info
Apr 22 12:54:39 Erased: less
Apr 22 12:54:40 Erased: pcre
Apr 22 12:54:41 Erased: libselinux
Apr 22 12:54:41 Erased: libstdc++
Apr 22 12:54:42 Erased: libacl
Apr 22 12:54:42 Erased: libcap
Apr 22 12:54:43 Erased: ncurses
Apr 22 12:54:44 Erased: chkconfig
Apr 22 12:54:45 Erased: libsepol
Apr 22 12:54:46 Erased: popt
Apr 22 12:54:46 Erased: libattr
Apr 22 12:54:47 Erased: zlib
Apr 22 12:54:47 Erased: audit-libs
Apr 22 12:54:48 Erased: db4
Apr 22 12:54:49 Erased: ncurses-libs
Apr 22 12:54:50 Erased: bash
Apr 22 12:54:51 Erased: glibc-common
Apr 22 12:54:52 Erased: nss-softokn-freebl
Apr 22 10:54:53 Erased: glibc
Apr 22 10:54:55 Erased: basesystem
Apr 22 10:54:58 Erased: filesystem
Apr 22 10:54:59 Erased: setup
Apr 22 10:55:01 Erased: ncurses-base
Apr 22 10:55:02 Erased: libgcc
-------------------------------------------------
Another tidbit, this time from /var/log/messages:
...
Apr 22 12:41:03 iou11 yum: Erased: valgrind
Apr 22 12:41:04 iou11 cpuspeed: Disabling ondemand cpu frequency scaling governor
Apr 22 12:41:04 iou11 kernel:
Apr 22 12:41:04 iou11 kernel: =============================================
Apr 22 12:41:04 iou11 kernel: [ INFO: possible recursive locking detected ]
Apr 22 12:41:04 iou11 kernel: 2.6.33.2-41.fc13.i686 #1
Apr 22 12:41:04 iou11 kernel: ---------------------------------------------
Apr 22 12:41:04 iou11 kernel: cpuspeed/11450 is trying to acquire lock:
Apr 22 12:41:04 iou11 kernel: (s_active){++++.+}, at: [<c0524cac>]
sysfs_hash_and_remove+0x42/0x54
Apr 22 12:41:04 iou11 kernel:
Apr 22 12:41:04 iou11 kernel: but task is already holding lock:
Apr 22 12:41:04 iou11 kernel: (s_active){++++.+}, at: [<c0526680>]
sysfs_get_active_two+0x1b/0x39
Apr 22 12:41:04 iou11 kernel:
Apr 22 12:41:04 iou11 kernel: other info that might help us debug this:
Apr 22 12:41:04 iou11 kernel: 4 locks held by cpuspeed/11450:
Apr 22 12:41:04 iou11 kernel: #0: (&buffer->mutex){+.+.+.}, at: [<c0525460>]
sysfs_write_file+0x2a/0xf0
Apr 22 12:41:04 iou11 kernel: #1: (s_active){++++.+}, at: [<c0526680>]
sysfs_get_active_two+0x1b/0x39
Apr 22 12:41:04 iou11 kernel: #2: (s_active){++++.+}, at: [<c052668b>]
sysfs_get_active_two+0x26/0x39
Apr 22 12:41:04 iou11 kernel: #3: (dbs_mutex){+.+.+.}, at: [<fada2c35>]
cpufreq_governor_dbs+0x24b/0x2da [cpufreq_ondemand]
Apr 22 12:41:04 iou11 kernel:
Apr 22 12:41:04 iou11 kernel: stack backtrace:
Apr 22 12:41:04 iou11 kernel: Pid: 11450, comm: cpuspeed Not tainted 2.6.33.2-41.fc13.i686
#1
Apr 22 12:41:04 iou11 kernel: Call Trace:
Apr 22 12:41:04 iou11 kernel: [<c07b14d3>] ? printk+0x14/0x19
Apr 22 12:41:04 iou11 kernel: [<c046382b>] __lock_acquire+0x83f/0xb89
Apr 22 12:41:04 iou11 kernel: [<c04624f1>] ? mark_held_locks+0x43/0x5b
Apr 22 12:41:04 iou11 kernel: [<c046287d>] ? debug_check_no_locks_freed+0x102/0x113
Apr 22 12:41:04 iou11 kernel: [<c046274d>] ? trace_hardirqs_on_caller+0x104/0x125
Apr 22 12:41:04 iou11 kernel: [<c0463c08>] lock_acquire+0x93/0xb1
Apr 22 12:41:04 iou11 kernel: [<c0524cac>] ? sysfs_hash_and_remove+0x42/0x54
Apr 22 12:41:04 iou11 kernel: [<c05264b4>] sysfs_addrm_finish+0x9f/0x117
Apr 22 12:41:04 iou11 kernel: [<c0524cac>] ? sysfs_hash_and_remove+0x42/0x54
Apr 22 12:41:04 iou11 kernel: [<c0525ef7>] ? sysfs_addrm_start+0x25/0x29
Apr 22 12:41:04 iou11 kernel: [<c0525ef7>] ? sysfs_addrm_start+0x25/0x29
Apr 22 12:41:04 iou11 kernel: [<c0524cac>] sysfs_hash_and_remove+0x42/0x54
Apr 22 12:41:04 iou11 kernel: [<c052745f>] sysfs_remove_group+0x7b/0xaa
Apr 22 12:41:04 iou11 kernel: [<fada2c42>] cpufreq_governor_dbs+0x258/0x2da
[cpufreq_ondemand]
Apr 22 12:41:04 iou11 kernel: [<c04613bd>] ? lock_release_holdtime+0x31/0xd6
Apr 22 12:41:04 iou11 kernel: [<c06ff744>] __cpufreq_governor+0x6b/0xa2
Apr 22 12:41:04 iou11 kernel: [<c070029c>] __cpufreq_set_policy+0x159/0x1e8
Apr 22 12:41:04 iou11 kernel: [<c0700700>] store_scaling_governor+0x171/0x1a6
Apr 22 12:41:04 iou11 kernel: [<c0700976>] ? handle_update+0x0/0x2d
Apr 22 12:41:04 iou11 kernel: [<c070058f>] ? store_scaling_governor+0x0/0x1a6
Apr 22 12:41:04 iou11 kernel: [<c070012a>] store+0x47/0x60
Apr 22 12:41:04 iou11 kernel: [<c05254fb>] sysfs_write_file+0xc5/0xf0
Apr 22 12:41:04 iou11 kernel: [<c0525436>] ? sysfs_write_file+0x0/0xf0
Apr 22 12:41:04 iou11 kernel: [<c04e0722>] vfs_write+0x85/0xe4
Apr 22 12:41:04 iou11 kernel: [<c04e081f>] sys_write+0x40/0x62
Apr 22 12:41:04 iou11 kernel: [<c07b406c>] syscall_call+0x7/0xb
Apr 22 12:41:04 iou11 yum: Erased: cpuspeed
...
2:25 p.m.
On Thu, 22 Apr 2010, Jim Meyering wrote:
I hope it's just me...
but I was very dismayed to find that today's F13 update (which pulled
in a lot of changes) hosed my laptop. It removed almost everything
from /boot, and removed or emptied /sbin, /bin, /usr/sbin and /usr/bin.
It removed nearly everything from /lib and /usr/lib.
I suspect that it removed everything yum-owned, since the few remaining
files (at least the shift-jis ones) are ones I put there manually:
What happened?
I started the "yum -y update", and didn't hang around to watch everything.
When I came back, the text displayed in all terminals was in a completely
illegible all-rectangles font, but emacs was ok (I'd installed it myself).
However, I couldn't start a shell from emacs (no surprise, now that I
know /bin was removed). Maybe yum actually told me it was going to
remove everything and if I'd been watching I could have stopped it.
I don't know.
pleae look in /var/lib/yum/history/
and attach any/all files you find there to a bug report.
but just going by the log you attached it looks like an update followed by
cleanup erasures - but the history log will tell us a lot more.
-sv
4:01 p.m.
Seth Vidal wrote:
On Thu, 22 Apr 2010, Jim Meyering wrote:
> I hope it's just me...
> but I was very dismayed to find that today's F13 update (which pulled
> in a lot of changes) hosed my laptop. It removed almost everything
> from /boot, and removed or emptied /sbin, /bin, /usr/sbin and /usr/bin.
> It removed nearly everything from /lib and /usr/lib.
> I suspect that it removed everything yum-owned, since the few remaining
> files (at least the shift-jis ones) are ones I put there manually:
>
> What happened?
> I started the "yum -y update", and didn't hang around to watch
everything.
> When I came back, the text displayed in all terminals was in a completely
> illegible all-rectangles font, but emacs was ok (I'd installed it myself).
> However, I couldn't start a shell from emacs (no surprise, now that I
> know /bin was removed). Maybe yum actually told me it was going to
> remove everything and if I'd been watching I could have stopped it.
> I don't know.
pleae look in /var/lib/yum/history/
and attach any/all files you find there to a bug report.
but just going by the log you attached it looks like an update followed by
cleanup erasures - but the history log will tell us a lot more.
There was only one: history-2010-03-08.sqlite
BZ-attached here:
http://bugzilla.redhat.com/584997
2:01 a.m.
On 22/04/10 22:01, Jim Meyering wrote:
There was only one: history-2010-03-08.sqlite
BZ-attached here:
http://bugzilla.redhat.com/584997
Read up on:
yum-plugin-protect-packages
if your going on autopilot.
--
Regards,
Frank Murphy
UTF_8 Encoded, Fedora.x86 64-32 Hybrid
8:30 a.m.
Frank Murphy wrote:
On 22/04/10 22:01, Jim Meyering wrote:
> There was only one: history-2010-03-08.sqlite
> BZ-attached here:
>
> http://bugzilla.redhat.com/584997
Read up on:
yum-plugin-protect-packages
if your going on autopilot.
Thanks. Installed.
IMHO, one should always be able to run "yum -y update" without fear
of such damage. Maybe that's naive, but with the exception of
yesterday's run, it's worked for me for more than two years of
rawhide and F10..F13.
8:33 a.m.
On Fri, 23 Apr 2010, Jim Meyering wrote:
Frank Murphy wrote:
> On 22/04/10 22:01, Jim Meyering wrote:
>> There was only one: history-2010-03-08.sqlite
>> BZ-attached here:
>>
>> http://bugzilla.redhat.com/584997
>
> Read up on:
> yum-plugin-protect-packages
>
> if your going on autopilot.
Thanks. Installed.
IMHO, one should always be able to run "yum -y update" without fear
of such damage. Maybe that's naive, but with the exception of
yesterday's run, it's worked for me for more than two years of
rawhide and F10..F13.
except we don't know what happened yesterday.
You didn't happen to keep the depsolving output on the console did you?
Also - were there any plugins installed?
-sv
12:31 p.m.
Seth Vidal wrote:
On Fri, 23 Apr 2010, Jim Meyering wrote:
> Frank Murphy wrote:
>> On 22/04/10 22:01, Jim Meyering wrote:
>>> There was only one: history-2010-03-08.sqlite
>>> BZ-attached here:
>>>
>>> http://bugzilla.redhat.com/584997
>>
>> Read up on:
>> yum-plugin-protect-packages
>>
>> if your going on autopilot.
>
> Thanks. Installed.
> IMHO, one should always be able to run "yum -y update" without fear
> of such damage. Maybe that's naive, but with the exception of
> yesterday's run, it's worked for me for more than two years of
> rawhide and F10..F13.
except we don't know what happened yesterday.
You didn't happen to keep the depsolving output on the console did you?
I wish I'd been that prescient.
As mentioned, when I came back after the offending
command had finished, all I could see in all terminal consoles
were little rectangles in place of text. So while I could
have saved it to file via "screen" (as long it was still within
the 30k scrollback), I didn't think to do that.
Also - were there any plugins installed?
I think yum-fastestmirror was installed.
Other than that, no.
12:36 p.m.
On Fri, 23 Apr 2010, Jim Meyering wrote:
Seth Vidal wrote:
> On Fri, 23 Apr 2010, Jim Meyering wrote:
>> Frank Murphy wrote:
>>> On 22/04/10 22:01, Jim Meyering wrote:
>>>> There was only one: history-2010-03-08.sqlite
>>>> BZ-attached here:
>>>>
>>>> http://bugzilla.redhat.com/584997
>>>
>>> Read up on:
>>> yum-plugin-protect-packages
>>>
>>> if your going on autopilot.
>>
>> Thanks. Installed.
>> IMHO, one should always be able to run "yum -y update" without fear
>> of such damage. Maybe that's naive, but with the exception of
>> yesterday's run, it's worked for me for more than two years of
>> rawhide and F10..F13.
>
> except we don't know what happened yesterday.
>
> You didn't happen to keep the depsolving output on the console did you?
I wish I'd been that prescient.
As mentioned, when I came back after the offending
command had finished, all I could see in all terminal consoles
were little rectangles in place of text. So while I could
have saved it to file via "screen" (as long it was still within
the 30k scrollback), I didn't think to do that.
> Also - were there any plugins installed?
I think yum-fastestmirror was installed.
Other than that, no.
langpacks was installed, too.
But given the history db and w/o any other output - I think we're going to
be hardpressed to figure out what happened.
-sv
2:42 p.m.
Seth Vidal wrote:
On Fri, 23 Apr 2010, Jim Meyering wrote:
> Seth Vidal wrote:
>> On Fri, 23 Apr 2010, Jim Meyering wrote:
>>> Frank Murphy wrote:
>>>> On 22/04/10 22:01, Jim Meyering wrote:
>>>>> There was only one: history-2010-03-08.sqlite
>>>>> BZ-attached here:
>>>>>
>>>>> http://bugzilla.redhat.com/584997
>>>>
>>>> Read up on:
>>>> yum-plugin-protect-packages
>>>>
>>>> if your going on autopilot.
>>>
>>> Thanks. Installed.
>>> IMHO, one should always be able to run "yum -y update" without
fear
>>> of such damage. Maybe that's naive, but with the exception of
>>> yesterday's run, it's worked for me for more than two years of
>>> rawhide and F10..F13.
>>
>> except we don't know what happened yesterday.
>>
>> You didn't happen to keep the depsolving output on the console did you?
>
> I wish I'd been that prescient.
>
> As mentioned, when I came back after the offending
> command had finished, all I could see in all terminal consoles
> were little rectangles in place of text. So while I could
> have saved it to file via "screen" (as long it was still within
> the 30k scrollback), I didn't think to do that.
>
>> Also - were there any plugins installed?
>
> I think yum-fastestmirror was installed.
> Other than that, no.
langpacks was installed, too.
But given the history db and w/o any other output - I think we're going to
be hardpressed to figure out what happened.
I've just realized that I had a list of all packages/versions
that were installed as of a few weeks ago (April 5).
In case it helps:
ConsoleKit-0.4.1-5.fc13.i686
ConsoleKit-libs-0.4.1-5.fc13.i686
ConsoleKit-x11-0.4.1-5.fc13.i686
DeviceKit-power-0.9.0-1.fc13.i686
GConf2-2.28.1-1.fc13.i686
GConf2-gtk-2.28.1-1.fc13.i686
GitPython-0.1.6-2.fc13.noarch
ImageMagick-6.5.8.10-6.fc13.i686
ImageMagick-c++-6.5.8.10-6.fc13.i686
ImageMagick-perl-6.5.8.10-6.fc13.i686
MAKEDEV-3.24-4.i686
MagicPoint-1.11b-10.fc12.i686
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2:52 p.m.
On Fri, 23 Apr 2010, Jim Meyering wrote:
I've just realized that I had a list of all packages/versions
that were installed as of a few weeks ago (April 5).
In case it helps:
Yah - the history sqlite file you uploaded has all that info in there (in
a round about way) but the problem still is we don't know what
precipitated all the erasures.
b/c those erasures are JUST erasures, they aren't the cleanup step of an
update.
which points me at weird plugin behavior.
-sv
6:38 p.m.
On Fri, 2010-04-23 at 15:52 -0400, Seth Vidal wrote:
On Fri, 23 Apr 2010, Jim Meyering wrote:
> I've just realized that I had a list of all packages/versions
> that were installed as of a few weeks ago (April 5).
> In case it helps:
>
Yah - the history sqlite file you uploaded has all that info in there (in
a round about way) but the problem still is we don't know what
precipitated all the erasures.
b/c those erasures are JUST erasures, they aren't the cleanup step of an
update.
which points me at weird plugin behavior.
Jim, is it possible you were running with "LANG=C"?
If so I'm 99% sure I've found the bug:
https://bugzilla.redhat.com/show_bug.cgi?id=585424
Langpacks goes on crack in LANG=C, for "removals" _and_ "updated",
removing everything
--
James Antill - james(a)fedoraproject.org
http://yum.baseurl.org/wiki/releases
http://yum.baseurl.org/wiki/whatsnew/3.2.28
http://yum.baseurl.org/wiki/YumMultipleMachineCaching
3:59 p.m.
James Antill wrote:
On Fri, 2010-04-23 at 15:52 -0400, Seth Vidal wrote:
>
> On Fri, 23 Apr 2010, Jim Meyering wrote:
>
> > I've just realized that I had a list of all packages/versions
> > that were installed as of a few weeks ago (April 5).
> > In case it helps:
> >
>
> Yah - the history sqlite file you uploaded has all that info in there (in
> a round about way) but the problem still is we don't know what
> precipitated all the erasures.
>
> b/c those erasures are JUST erasures, they aren't the cleanup step of an
> update.
>
> which points me at weird plugin behavior.
Jim, is it possible you were running with "LANG=C"?
Root's LANG setting was the relatively common default,
but it's overridden by my LC_ALL=C setting:
$ locale :
LANG=en_US.UTF-8
LC_CTYPE="C"
LC_NUMERIC="C"
LC_TIME="C"
LC_COLLATE="C"
LC_MONETARY="C"
LC_MESSAGES="C"
LC_PAPER="C"
LC_NAME="C"
LC_ADDRESS="C"
LC_TELEPHONE="C"
LC_MEASUREMENT="C"
LC_IDENTIFICATION="C"
LC_ALL=C
If so I'm 99% sure I've found the bug:
https://bugzilla.redhat.com/show_bug.cgi?id=585424
Langpacks goes on crack in LANG=C, for "removals" _and_ "updated",
removing everything
Nice. Glad you found the cause/fix.
Thanks!
1:44 a.m.
Jim Meyering <jim <at> meyering.net> writes:
IMHO, one should always be able to run "yum -y update"
without fear
of such damage. Maybe that's naive, but with the exception of
yesterday's run, it's worked for me for more than two years of
rawhide and F10..F13.
In x86_64 F13 and Rawhide, often dependencies will be messed up and yum attempts
to install unwanted 32-bit packages.
5:04 p.m.
On Thu, Apr 22, 2010 at 11:09 AM, Jim Meyering <jim(a)meyering.net> wrote:
I hope it's just me...
but I was very dismayed to find that today's F13 update (which pulled
in a lot of changes) hosed my laptop.
I have two 64bit F13 laptops... fully updated with updates-testing
except for gnome-icon-theme-extras which has a file conflict with
another package so I'm holding back.
The caveat of course is that you may have something else installed
that I don't have that triggered a problem for you.. so take my
5:53 p.m.
On Thu, 22 Apr 2010, Jeff Spaleta wrote:
On Thu, Apr 22, 2010 at 11:09 AM, Jim Meyering
<jim(a)meyering.net> wrote:
> I hope it's just me...
> but I was very dismayed to find that today's F13 update (which pulled
> in a lot of changes) hosed my laptop.
I have two 64bit F13 laptops... fully updated with updates-testing
except for gnome-icon-theme-extras which has a file conflict with
another package so I'm holding back.
The caveat of course is that you may have something else installed
that I don't have that triggered a problem for you.. so take my
Jef,
Run "echo 'n' | yum --skip-broken update"
for me and save the output.
thanks,
-sv
6:53 p.m.
On Thu, Apr 22, 2010 at 2:53 PM, Seth Vidal <skvidal(a)fedoraproject.org> wrote:
Run "echo 'n' | yum --skip-broken update"
for me and save the output.
It's really unexciting output.
Output below:
Loaded plugins: downloadonly, presto, refresh-packagekit
Setting up Update Process
Resolving Dependencies
--> Running transaction check
---> Package gnome-icon-theme-extras.noarch 0:2.30.1-1.fc13 set to be updated
--> Finished Dependency Resolution
Dependencies Resolved
================================================================================
Package Arch Version Repository Size
================================================================================
Updating:
gnome-icon-theme-extras noarch 2.30.1-1.fc13 updates-testing 605 k
Transaction Summary
================================================================================
Install 0 Package(s)
Upgrade 1 Package(s)
Total size: 605 k
Is this ok [y/N]: Exiting on user Command
Complete!
6 p.m.
On Thu, 2010-04-22 at 21:09 +0200, Jim Meyering wrote:
I started the "yum -y update"
Well there's your problem. Only half kidding, but yum -y is quite
dangerous, as it will happily do things like "yum -y remove glibc".
That said, it shouldn't have removed things in order to process the
update, so that's where the kidding part comes in. Just a word of
caution, be very careful with -y.
--
Jesse Keating
Fedora -- Freedom² is a feature!
identi.ca: http://identi.ca/jkeating
5174
days inactive
5178
days old
16 comments
7 participants
participants (7)
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Andre Robatino -
Frank Murphy -
James Antill -
Jef Spaleta -
Jesse Keating -
Jim Meyering -
Seth Vidal