Dear list,
While I have started to package R libraries I needed the package R-BSgenome.Dmelanogaster.FlyBase.r51 and R-BSgenome.Celegans.UCSC.ce2 as dependencies, there are nowadays not needed any more and their size and interest make me dubious of their interest.
Is anyone here using them ? If so I will invest time to build the new dependencies and the latest version, else I think I will orphan them.
Stupid question, but is there anyone here using one of the bioconductor package ? (except Alex who I know test them ;-) )
Thanks && regards,
Pierre
"P" == Pierre-Yves writes:
P> Dear list, While I have started to package R libraries I needed the P> package R-BSgenome.Dmelanogaster.FlyBase.r51 and P> R-BSgenome.Celegans.UCSC.ce2 as dependencies, there are nowadays P> not needed any more and their size and interest make me dubious of P> their interest.
P> Is anyone here using them ? If so I will invest time to build the P> new dependencies and the latest version, else I think I will orphan P> them.
P> Stupid question, but is there anyone here using one of the P> bioconductor package ? (except Alex who I know test them ;-) )
I'm sure there are others outside this list who use them. We should probably consider publicizing their existence a little more widely. By the way, do we now have the "minimal" or "base" set of bioconductor packages in Fedora? We should update the feature page with the list of unpackaged R modules if there are any:
https://fedoraproject.org/wiki/Features/Bioconductor#Scope
Alex
On Sat, 2009-02-21 at 01:54 -0700, Alex Lancaster wrote:
I'm sure there are others outside this list who use them. We should probably consider publicizing their existence a little more widely. By the way, do we now have the "minimal" or "base" set of bioconductor packages in Fedora? We should update the feature page with the list of unpackaged R modules if there are any:
No, there is not yet new packages done, but I was thinking on starting this project a bit more, that's why I was trying to get R2spec able to generate "ready-to-build" spec files but since I can not play with %doc and %exclude at the same time to be able to include the whole folder well we'll have to do without :)
I will probably ask for some reviews on R package on the bugzilla later this week.
Thanks for your interest, Regards,
P.Yves
r-devel@lists.fedoraproject.org
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Alex Lancaster -
Pierre-Yves Chibon